Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87199084
Identifier: 87199084
GI number: 87199084
Start: 1105871
End: 1106659
Strand: Direct
Name: 87199084
Synonym: Saro_1062
Alternate gene names: NA
Gene position: 1105871-1106659 (Clockwise)
Preceding gene: 87199083
Following gene: 87199085
Centisome position: 31.05
GC content: 68.69
Gene sequence:
>789_bases ATGGGACGCATCGCGGCGCTGGGGGCGCTATCGCTGGCATTCGCTTCGCCGCTGATGGCGCAGGCGGCGAACGGAGTAGG GACACCGTTCGAACTGGCCTTCTGGCAATCGGTCGCCGGAAGTGACGACCCTGCCGTCTACGAGGCTTATCTCCAGCAGT ACCCGACAGGTACGTTCAGCGCGCTGGCGAAGGCCAAGGTCGCGAGCCTGCGCAAGGGTGCGGTGCCCGAGCGCACGGCG GAACCTGCCGTGGCTGCCGAGCCTGCCGTGGCTGCCGAACCTGCCGTGATTGCGGAGGCCGCTGCCGCGAGACCTGTCTC GGAGGCCGTGCAGGCAGCGGTTCCCGATACTGATGCGGCCCTGCTCGGCGAACTGGCGCGGTCGCAGGAGCCGGGCGCCA GCACTGCCCAGGTCGCGGCTGCACAGGGCTTCGCCTTGCCGCTGCGCCCGTCGCTGGCCGACGTGCCGGATCTGCCGCTG CCGGGCGCGTTCTGCTCGGCCGAACAGCGCAATGCATTTTACGAAACCCGCTACAAGCCGGTGCTTGAGCAGGCACGGTC GAACAATGCGGCGGCGGTGGCGCACATGCACAGGCTGCAGCAGGCATACGACAGCTACCAGCTTTCGCGCGACCCCGCGC CGATGAACGCGATTGCTGCCGAAGCGCGCGACTACCAGCAGCAAGTGGCGGCCATGACATACAGCCGCCAGGCCGCGCTC GTGCGGCAGTTCGATGCGATCATGGCCGTGCCCGTATCGGCCTGCCAGGTGGCGGCGGCCGCGAAATGA
Upstream 100 bases:
>100_bases TAACCCTGTTTGTTGGGTGCCGGTTGACGGTCCGCAGCGCCAAGTTCGCTTTGGACCTGCGGCTGGCACCGGGACGCCTT GCGCAGCGGAGAGACGTGAA
Downstream 100 bases:
>100_bases AAAGCTTCGTCGGCGCGTTTGCGGCATTTGCCTTGCTTGCGGCGTCTCCCGCCGGCGCGCAGGGGTGCCTCGACCGCGAG ACGCTGACCGCCGCGCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MGRIAALGALSLAFASPLMAQAANGVGTPFELAFWQSVAGSDDPAVYEAYLQQYPTGTFSALAKAKVASLRKGAVPERTA EPAVAAEPAVAAEPAVIAEAAAARPVSEAVQAAVPDTDAALLGELARSQEPGASTAQVAAAQGFALPLRPSLADVPDLPL PGAFCSAEQRNAFYETRYKPVLEQARSNNAAAVAHMHRLQQAYDSYQLSRDPAPMNAIAAEARDYQQQVAAMTYSRQAAL VRQFDAIMAVPVSACQVAAAAK
Sequences:
>Translated_262_residues MGRIAALGALSLAFASPLMAQAANGVGTPFELAFWQSVAGSDDPAVYEAYLQQYPTGTFSALAKAKVASLRKGAVPERTA EPAVAAEPAVAAEPAVIAEAAAARPVSEAVQAAVPDTDAALLGELARSQEPGASTAQVAAAQGFALPLRPSLADVPDLPL PGAFCSAEQRNAFYETRYKPVLEQARSNNAAAVAHMHRLQQAYDSYQLSRDPAPMNAIAAEARDYQQQVAAMTYSRQAAL VRQFDAIMAVPVSACQVAAAAK >Mature_261_residues GRIAALGALSLAFASPLMAQAANGVGTPFELAFWQSVAGSDDPAVYEAYLQQYPTGTFSALAKAKVASLRKGAVPERTAE PAVAAEPAVAAEPAVIAEAAAARPVSEAVQAAVPDTDAALLGELARSQEPGASTAQVAAAQGFALPLRPSLADVPDLPLP GAFCSAEQRNAFYETRYKPVLEQARSNNAAAVAHMHRLQQAYDSYQLSRDPAPMNAIAAEARDYQQQVAAMTYSRQAALV RQFDAIMAVPVSACQVAAAAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27213; Mature: 27082
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRIAALGALSLAFASPLMAQAANGVGTPFELAFWQSVAGSDDPAVYEAYLQQYPTGTFS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH ALAKAKVASLRKGAVPERTAEPAVAAEPAVAAEPAVIAEAAAARPVSEAVQAAVPDTDAA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHH LLGELARSQEPGASTAQVAAAQGFALPLRPSLADVPDLPLPGAFCSAEQRNAFYETRYKP HHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHH VLEQARSNNAAAVAHMHRLQQAYDSYQLSRDPAPMNAIAAEARDYQQQVAAMTYSRQAAL HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VRQFDAIMAVPVSACQVAAAAK HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GRIAALGALSLAFASPLMAQAANGVGTPFELAFWQSVAGSDDPAVYEAYLQQYPTGTFS CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH ALAKAKVASLRKGAVPERTAEPAVAAEPAVAAEPAVIAEAAAARPVSEAVQAAVPDTDAA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHH LLGELARSQEPGASTAQVAAAQGFALPLRPSLADVPDLPLPGAFCSAEQRNAFYETRYKP HHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHH VLEQARSNNAAAVAHMHRLQQAYDSYQLSRDPAPMNAIAAEARDYQQQVAAMTYSRQAAL HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VRQFDAIMAVPVSACQVAAAAK HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA