Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yfgL [H]
Identifier: 87198966
GI number: 87198966
Start: 991721
End: 993067
Strand: Direct
Name: yfgL [H]
Synonym: Saro_0944
Alternate gene names: 87198966
Gene position: 991721-993067 (Clockwise)
Preceding gene: 87198965
Following gene: 87198967
Centisome position: 27.84
GC content: 67.19
Gene sequence:
>1347_bases ATGACCCCCAACCCCAATATTCGCCGCGCTTCGCTCGCCAGCGTGCTGGTCCTTGCGCTCGCGCTGGGTGGCTGCGGCAT TTTCGGCGGCAAGGACAAGGCCAAGACGACCCCGACGCTGGGCCAGCGCGTGCCGATCCTGTCGAAGATCGAGGCCGGCA CAAAGGTCGACGATTCGATCTCGCTGACCACGGTCGTCCTGCCCGCGCCCGAAGTGAACGCCGATTTCGCGCAGGGCGGC GGCAATGCGAGCAAGTCCTACGGCCACCTCGCGCTCGGCGATGCGCCGCGCAAGGCCTGGACGGTCGGGATCGCCGGGTC CTCCTCGAAGCAGCGTCTGGCCGCGTCGCCGGTCGTCGGCGGGGGCAAGCTCTACGTGATGGACACGGACGGCACCGTCC ATGCCTTCGACGCGGCGAGCGGGAAGTCCGTGTGGGAGACCCCGGTCAAGGCCGAGAAGCAGAACGCCAACTCCACCTTC GGCGGCGGCGCGTCCTATGACGACGGCGTGGTCTATGTGACCAATGGCGTTGGCGAAGTCGCTGCGCTTGATGCCGCTAA CGGAGCGGTAAAGTGGCGCGTCAAGCCCGCCGGCCCGCTGCGCGGATCGCCCACGGTCGCCTTCGGGCAGGTCATGGCGA TGACCCAGGACAACCAGATCGTCACCCTGAACGCCGCCGATGGCGTGGTCCTGTGGAACGAGAACGCCTCGGTCGGACAG ACCAACGTGTTCGGCGTCGCCTCGCCCGCGGCAGGGCAGGGCACGATCGTGGCCGGTTATTCCTCGGGCGAACTGGTCGC CTACCGCTACGAGAACGGGCGCCAGCTCTGGGCCGACGCCCTTGCGCGCACCAGCATCGCGACCAGCGTCTCGACGCTGA CCGACATCGACGCCGATCCGATCATCGAGCGCGGCCGCGTCTTCGCGCTGGGGCAGGGCGGGCGCATGGCCGCCTACGAA CTCGTGACCGGCCAGCGCGTGTGGGAACTCAATCTCGCGGGCATCTCCACCCCCGCCATCGCCGGTGACTGGATCTTCAC GCTGACCGACGAGGCCAAGCTGCTGTGCATCGCCAAGTCCAACGGCAAGGTCCGCTGGATGACGCAGCTTCCGCGTTATC GGAACGAGAAGAAGAAGAAGAACCAGATCCTGTGGACCGGCCCGGTCCTTGCCGGCAACCGCCTGTGGATCGCCAATTCG CGCGGCGAAGTGATGCACGCATCCGTCACCGACGGCACCGTCAGCGAATTCACCAAGCTCGGCGCGGCGGTAAGCCTTGC CCCCGTGGTCGCGAACCAGACGCTCTACATCCTCGACGACAACGGCAAGATCACCGCGTTCCGCTGA
Upstream 100 bases:
>100_bases GCAGATGGCGGGAATGCTCGGCGTCGACGCGGTCGAGGACCCGGGCGAAACCGCGTTGGTCCAGCCTGCGGCACAATAAT TCATCGAGGATGCACCGGAA
Downstream 100 bases:
>100_bases TCAAAACCATTTCCTAACGCTTGCCGGGTAGGGACTGTGCGCATGAACGCGCGTCCCTCCCCGCCGCCTTCCGACGTATC AGCCGGCGTCGGCCTTGCCG
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTPNPNIRRASLASVLVLALALGGCGIFGGKDKAKTTPTLGQRVPILSKIEAGTKVDDSISLTTVVLPAPEVNADFAQGG GNASKSYGHLALGDAPRKAWTVGIAGSSSKQRLAASPVVGGGKLYVMDTDGTVHAFDAASGKSVWETPVKAEKQNANSTF GGGASYDDGVVYVTNGVGEVAALDAANGAVKWRVKPAGPLRGSPTVAFGQVMAMTQDNQIVTLNAADGVVLWNENASVGQ TNVFGVASPAAGQGTIVAGYSSGELVAYRYENGRQLWADALARTSIATSVSTLTDIDADPIIERGRVFALGQGGRMAAYE LVTGQRVWELNLAGISTPAIAGDWIFTLTDEAKLLCIAKSNGKVRWMTQLPRYRNEKKKKNQILWTGPVLAGNRLWIANS RGEVMHASVTDGTVSEFTKLGAAVSLAPVVANQTLYILDDNGKITAFR
Sequences:
>Translated_448_residues MTPNPNIRRASLASVLVLALALGGCGIFGGKDKAKTTPTLGQRVPILSKIEAGTKVDDSISLTTVVLPAPEVNADFAQGG GNASKSYGHLALGDAPRKAWTVGIAGSSSKQRLAASPVVGGGKLYVMDTDGTVHAFDAASGKSVWETPVKAEKQNANSTF GGGASYDDGVVYVTNGVGEVAALDAANGAVKWRVKPAGPLRGSPTVAFGQVMAMTQDNQIVTLNAADGVVLWNENASVGQ TNVFGVASPAAGQGTIVAGYSSGELVAYRYENGRQLWADALARTSIATSVSTLTDIDADPIIERGRVFALGQGGRMAAYE LVTGQRVWELNLAGISTPAIAGDWIFTLTDEAKLLCIAKSNGKVRWMTQLPRYRNEKKKKNQILWTGPVLAGNRLWIANS RGEVMHASVTDGTVSEFTKLGAAVSLAPVVANQTLYILDDNGKITAFR >Mature_447_residues TPNPNIRRASLASVLVLALALGGCGIFGGKDKAKTTPTLGQRVPILSKIEAGTKVDDSISLTTVVLPAPEVNADFAQGGG NASKSYGHLALGDAPRKAWTVGIAGSSSKQRLAASPVVGGGKLYVMDTDGTVHAFDAASGKSVWETPVKAEKQNANSTFG GGASYDDGVVYVTNGVGEVAALDAANGAVKWRVKPAGPLRGSPTVAFGQVMAMTQDNQIVTLNAADGVVLWNENASVGQT NVFGVASPAAGQGTIVAGYSSGELVAYRYENGRQLWADALARTSIATSVSTLTDIDADPIIERGRVFALGQGGRMAAYEL VTGQRVWELNLAGISTPAIAGDWIFTLTDEAKLLCIAKSNGKVRWMTQLPRYRNEKKKKNQILWTGPVLAGNRLWIANSR GEVMHASVTDGTVSEFTKLGAAVSLAPVVANQTLYILDDNGKITAFR
Specific function: May play a role in a homeostatic control mechanism that coordinates the overall outer membrane assembly process [H]
COG id: COG1520
COG function: function code S; FOG: WD40-like repeat
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To R.prowazekii RP232 [H]
Homologues:
Organism=Escherichia coli, GI1788859, Length=357, Percent_Identity=26.6106442577031, Blast_Score=135, Evalue=6e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017687 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 [H]
Pfam domain/function: PF01011 PQQ [H]
EC number: NA
Molecular weight: Translated: 46806; Mature: 46674
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPNPNIRRASLASVLVLALALGGCGIFGGKDKAKTTPTLGQRVPILSKIEAGTKVDDSI CCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCE SLTTVVLPAPEVNADFAQGGGNASKSYGHLALGDAPRKAWTVGIAGSSSKQRLAASPVVG EEEEEEEECCCCCCHHHCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCEEECCCEEC GGKLYVMDTDGTVHAFDAASGKSVWETPVKAEKQNANSTFGGGASYDDGVVYVTNGVGEV CCEEEEEECCCCEEEEECCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCE AALDAANGAVKWRVKPAGPLRGSPTVAFGQVMAMTQDNQIVTLNAADGVVLWNENASVGQ EEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEEECCCCCCCC TNVFGVASPAAGQGTIVAGYSSGELVAYRYENGRQLWADALARTSIATSVSTLTDIDADP CEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC IIERGRVFALGQGGRMAAYELVTGQRVWELNLAGISTPAIAGDWIFTLTDEAKLLCIAKS HHCCCCEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEC NGKVRWMTQLPRYRNEKKKKNQILWTGPVLAGNRLWIANSRGEVMHASVTDGTVSEFTKL CCCEEEEECCCHHHCCHHHCCEEEEECCEEECCEEEEECCCCCEEEEEECCCCHHHHHHH GAAVSLAPVVANQTLYILDDNGKITAFR CCCEEEEEEECCCEEEEEECCCCEEEEC >Mature Secondary Structure TPNPNIRRASLASVLVLALALGGCGIFGGKDKAKTTPTLGQRVPILSKIEAGTKVDDSI CCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCE SLTTVVLPAPEVNADFAQGGGNASKSYGHLALGDAPRKAWTVGIAGSSSKQRLAASPVVG EEEEEEEECCCCCCHHHCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCEEECCCEEC GGKLYVMDTDGTVHAFDAASGKSVWETPVKAEKQNANSTFGGGASYDDGVVYVTNGVGEV CCEEEEEECCCCEEEEECCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCE AALDAANGAVKWRVKPAGPLRGSPTVAFGQVMAMTQDNQIVTLNAADGVVLWNENASVGQ EEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEEECCCCCCCC TNVFGVASPAAGQGTIVAGYSSGELVAYRYENGRQLWADALARTSIATSVSTLTDIDADP CEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC IIERGRVFALGQGGRMAAYELVTGQRVWELNLAGISTPAIAGDWIFTLTDEAKLLCIAKS HHCCCCEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEC NGKVRWMTQLPRYRNEKKKKNQILWTGPVLAGNRLWIANSRGEVMHASVTDGTVSEFTKL CCCEEEEECCCHHHCCHHHCCEEEEECCEEECCEEEEECCCCCEEEEEECCCCHHHHHHH GAAVSLAPVVANQTLYILDDNGKITAFR CCCEEEEEEECCCEEEEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]