Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198965
Identifier: 87198965
GI number: 87198965
Start: 990938
End: 991699
Strand: Direct
Name: 87198965
Synonym: Saro_0943
Alternate gene names: NA
Gene position: 990938-991699 (Clockwise)
Preceding gene: 87198964
Following gene: 87198966
Centisome position: 27.82
GC content: 65.49
Gene sequence:
>762_bases TTGGCTCTCCGTCCCGACCGTCCGCAATCCCGTTCCGACCAACTCGCCGAGCGTTCTGCAGGGCAGGGCGATGCCTTCCT GCGCGAAGTCGACGATGCCCTGCGCGAAGATCAGGTCTTCACCGCGGTGCAGAAGTACGGAAAGCCGGTTGGCGCCGCGA TCATCGCCGGGCTTCTCGGCCTTGCCGGTTGGCTCTGGTACGAGAACCACAACAATGCCGTCGCGGGCGAGCAGGGTGAA GTGCTGACCAAGGCGCTCGACCAGCTCGAAACGCGCAACCTCAAGGCTGCTGCCGACGAACTCGGCCCCCTCGCCAAGGA CGGCAACGAAGGTTACCGCGCGACCTCGCGCATGCTTGAAGCCGGAATCCTGGCCGAGCAGGGCAAGACGGCAGAAGCCG CGAAGGCCTTCGCCGCGATTGCCGCCGATGGAGGCGCGCCCCAGGCCTATCGCGATCTCGCGACGATTCGCGAAGTGGCC CTGGATTTCGACAAGCTTGCTCCCGACAAGGTGGTCGAGCGTCTCAAGCCGCTCGCCGTTCCCGGCAACGCCTGGTTCGG CAATGCCGGCGAATTGGTGGGCGTTGCCTACCTGAAGCAGGGCAAGAACGATCTGGCCGGCGCCTTGTTTGCCCAGATCG CCAAGGAAAAGACCGTGCCGGATTCGCTGCGTCGACGTGCGCGGCAGATGGCGGGAATGCTCGGCGTCGACGCGGTCGAG GACCCGGGCGAAACCGCGTTGGTCCAGCCTGCGGCACAATAA
Upstream 100 bases:
>100_bases GGCGGGTAGGAATCAATTCCGTTGAAAAGGCGGACCCATCCGCTAAACACCGCGCCAGACACACGCTAGCAAACGTCAAC CAATTCCCGAAAGCGCTGCC
Downstream 100 bases:
>100_bases TTCATCGAGGATGCACCGGAAATGACCCCCAACCCCAATATTCGCCGCGCTTCGCTCGCCAGCGTGCTGGTCCTTGCGCT CGCGCTGGGTGGCTGCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MALRPDRPQSRSDQLAERSAGQGDAFLREVDDALREDQVFTAVQKYGKPVGAAIIAGLLGLAGWLWYENHNNAVAGEQGE VLTKALDQLETRNLKAAADELGPLAKDGNEGYRATSRMLEAGILAEQGKTAEAAKAFAAIAADGGAPQAYRDLATIREVA LDFDKLAPDKVVERLKPLAVPGNAWFGNAGELVGVAYLKQGKNDLAGALFAQIAKEKTVPDSLRRRARQMAGMLGVDAVE DPGETALVQPAAQ
Sequences:
>Translated_253_residues MALRPDRPQSRSDQLAERSAGQGDAFLREVDDALREDQVFTAVQKYGKPVGAAIIAGLLGLAGWLWYENHNNAVAGEQGE VLTKALDQLETRNLKAAADELGPLAKDGNEGYRATSRMLEAGILAEQGKTAEAAKAFAAIAADGGAPQAYRDLATIREVA LDFDKLAPDKVVERLKPLAVPGNAWFGNAGELVGVAYLKQGKNDLAGALFAQIAKEKTVPDSLRRRARQMAGMLGVDAVE DPGETALVQPAAQ >Mature_252_residues ALRPDRPQSRSDQLAERSAGQGDAFLREVDDALREDQVFTAVQKYGKPVGAAIIAGLLGLAGWLWYENHNNAVAGEQGEV LTKALDQLETRNLKAAADELGPLAKDGNEGYRATSRMLEAGILAEQGKTAEAAKAFAAIAADGGAPQAYRDLATIREVAL DFDKLAPDKVVERLKPLAVPGNAWFGNAGELVGVAYLKQGKNDLAGALFAQIAKEKTVPDSLRRRARQMAGMLGVDAVED PGETALVQPAAQ
Specific function: Unknown
COG id: COG4649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26847; Mature: 26715
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALRPDRPQSRSDQLAERSAGQGDAFLREVDDALREDQVFTAVQKYGKPVGAAIIAGLLG CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAGWLWYENHNNAVAGEQGEVLTKALDQLETRNLKAAADELGPLAKDGNEGYRATSRMLE HHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH AGILAEQGKTAEAAKAFAAIAADGGAPQAYRDLATIREVALDFDKLAPDKVVERLKPLAV HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC PGNAWFGNAGELVGVAYLKQGKNDLAGALFAQIAKEKTVPDSLRRRARQMAGMLGVDAVE CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC DPGETALVQPAAQ CCCCCCCCCCCCC >Mature Secondary Structure ALRPDRPQSRSDQLAERSAGQGDAFLREVDDALREDQVFTAVQKYGKPVGAAIIAGLLG CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LAGWLWYENHNNAVAGEQGEVLTKALDQLETRNLKAAADELGPLAKDGNEGYRATSRMLE HHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH AGILAEQGKTAEAAKAFAAIAADGGAPQAYRDLATIREVALDFDKLAPDKVVERLKPLAV HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC PGNAWFGNAGELVGVAYLKQGKNDLAGALFAQIAKEKTVPDSLRRRARQMAGMLGVDAVE CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC DPGETALVQPAAQ CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA