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The map label for this gene is 87198914

Identifier: 87198914

GI number: 87198914

Start: 949333

End: 949764

Strand: Direct

Name: 87198914

Synonym: Saro_0892

Alternate gene names: NA

Gene position: 949333-949764 (Clockwise)

Preceding gene: 87198913

Following gene: 87198916

Centisome position: 26.65

GC content: 71.06

Gene sequence:

>432_bases
ATGCGCGTCGATTTCTACCAGCTTACCAGCGACCCGGCCGAACAGGTGCTGCCGCTGATCGCGCGCAACACTCTGGCGGC
GGGCGAGCGCCTGCTGGTCGTGTCCGACGACGAGGCCCAGCTTCGCCGCGTCGGCGAAGCGCTGTGGACGCGCCTGCCCG
AAACCTTCCTCGCCAACGGCCGTGCCGGCACCGCCCACGACGAACGCCAGCCGATCCTCCTGTCCGACGCCCCCGAGCCC
GCCAATGGCGCGAAGTTCATGGCGCTGGCCGATGGCGTCTGGCGCGAGGGTGCGTTCGAGCGCGTGTTCCTGCTCTTCCC
CCCCGCCCGCATCGACGATGCCCGTGGCTGCTGGCGCATGCTCGGCACGCGCGAGGGCGTGGAGCGCCGCTACTGGCGAC
AGGACGGCGGCAAGTGGAAAGAGGGGCCCTGA

Upstream 100 bases:

>100_bases
GCGGCCTGCCGTTCACATGGCGCAAGAAGTGGGAACGGGACTGGGACAACGTGAAGTTCTGTTCCGATCGCTGCCGCAGC
GGGAAGGGGAAAGCTGGCTG

Downstream 100 bases:

>100_bases
GGGGCAAACGTCAGAAGGGGGAAGCCTCACCCCGGGTCAAGCCCGGGGCGACGTAGGATCTAGAACGAAGGATATGTCGG
CAACTTCAATCCGCGTTGCA

Product: DNA polymerase III chi subunit, HolC

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Chi Subunit HolC; DNA Polymerase III Chi Subunit; DNA Polymerase III Chi Subunit Superfamily

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRVDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANGRAGTAHDERQPILLSDAPEP
ANGAKFMALADGVWREGAFERVFLLFPPARIDDARGCWRMLGTREGVERRYWRQDGGKWKEGP

Sequences:

>Translated_143_residues
MRVDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANGRAGTAHDERQPILLSDAPEP
ANGAKFMALADGVWREGAFERVFLLFPPARIDDARGCWRMLGTREGVERRYWRQDGGKWKEGP
>Mature_143_residues
MRVDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANGRAGTAHDERQPILLSDAPEP
ANGAKFMALADGVWREGAFERVFLLFPPARIDDARGCWRMLGTREGVERRYWRQDGGKWKEGP

Specific function: Unknown

COG id: COG2927

COG function: function code L; DNA polymerase III, chi subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 16150; Mature: 16150

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANG
CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHCCC
RAGTAHDERQPILLSDAPEPANGAKFMALADGVWREGAFERVFLLFPPARIDDARGCWRM
CCCCCCCCCCCEEEECCCCCCCCCEEEEECCCHHCCCCCCEEEEEECCCCCCCHHHHHHH
LGTREGVERRYWRQDGGKWKEGP
HHCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRVDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANG
CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHCCC
RAGTAHDERQPILLSDAPEPANGAKFMALADGVWREGAFERVFLLFPPARIDDARGCWRM
CCCCCCCCCCCEEEECCCCCCCCCEEEEECCCHHCCCCCCEEEEEECCCCCCCHHHHHHH
LGTREGVERRYWRQDGGKWKEGP
HHCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA