Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is lieA [H]
Identifier: 87198866
GI number: 87198866
Start: 893966
End: 895585
Strand: Direct
Name: lieA [H]
Synonym: Saro_0844
Alternate gene names: 87198866
Gene position: 893966-895585 (Clockwise)
Preceding gene: 87198865
Following gene: 87198867
Centisome position: 25.1
GC content: 65.43
Gene sequence:
>1620_bases ATGACATCTTGCCTGCGCGGGGCCGCGAGCGCCGCCGCCATTGCCCTTTGCACGTTCGCCGCCCCGGCCATTGCCGGACC CGCCGAGGACAAGCTGATCGCGCAGCTCCTGGACGAGGGATTGAACCGTTCCGATGCGATGGAGATCGCGTCGGAGCTGA TGGACCGCATCGGGCCGCGTCTCACCAATTCCGAAAATCATCGCAAGGCGGAGGACTGGGCTGCAGCCAAGTTCGCCTCG TTCGGGCTCAAGAACATCCACCGCGAACCGTTCGAGTTCGGGCTTGGCTGGAACCTCAAGTCCTATTCGGCGACGATGAC CTCGCCGCGCAGCCTGCCCCTCACCGTCCTGCCGGTCGCATGGTCGCCGCCCACCGGCGGCACGATCACCGCCCCGGTCA TCGTCGCGCCGATGACCAAGGTCGAGAATTTCGATGCGTGGAAGGGCAAGCTGGCCGGCCGGATCGTGCTGGTCAGCCTG CCTGGCGAGACCAGCGCGTCCGCAGATCCGGTGTTCGAGCGCCTCTCGGGCGAAGAGATCGGCAAGCTCGACAAGTATAC CTTGCCGCGCCACGACCCCGAAGGTCTGGCCATGCAGGTCGCCCGGCGTGGATTTGCCCGCAAGCTGTCGGAGTTCCTCA AGGCGGAAGGCGCGTTGGCCATGGTCCGCATGACCTATCGCGATGGCAAGCTGGTCCATGGCGAGGGCTATGACTTCGTG CCGGGCCAGACCCTTGCCGTGCCGGCGATGGACATGGCGCAGGAAGACTATCGCCGCCTCGTCCGCCTGGAGAAGACGGG TGCCGCCCCGCAGCTCTCGCTCAGCATCGACGCGAGCTTCGACGACAAGGATCTGATGGCGGACAACGTCATTGCCGAGA TCCCCGGCAGCGATCCCAAGGCGGGCTACGTCATGGCGGGTGCGCACTTCGACAGCTGGATCGCGGGCGACGGCGCATCC GACAATGGAGCGGGAAGCGTCGCCGTGATCGAGGCTGCACGCCTGCTCTCGAAAATGGGCGTCAAGCCGAAGCGCACCAT CCGCTTTGCGCTGTGGAGCGGGGAGGAGCAGGGGCTGCTGGGCTCGAAGGCCTATATCGAGCAGCATCTCGCCACCCGGC CGGTCGACCCGGCGCTAAAGGGCATCGACAGCTATTCGGCATGGCGCAATGCCTATCCGATCACGCCCAAGCCGGGCTAT TCCCAGCTCAAGGCCTATTTCAACATGGACAACGGTTCGGGCAAGTTCCGCGGCATTTATGCCGAGGGCAACGTTGCCGC CGCGCCGATCCTCAGGGAATGGCTCGCGCCCTTCAGCTCGCTCGGCGCGGACAAGGTGGTGATGAGCAAGACGGGCGGGA CCGACCACGTCTATCTCCAGGCAATCGGCCTGCCGGGCTACCAGTTCATCCAGGACCCGCTCGATTACGAGAGCCGCGTG CACCACTCCAGCCTCGACACGCTTGACCACATGCGCGCCGACGACATGAGGCAGGCCTCCGTCATTCTGGCGGGAATGCT GCTCCAGGCGGCGACAAGCGAGAAGGAACTGCCGCGCTCGCCGTTGCCGACCAAGCCGGACGCGACCGATCCGTTCAAGG TGCAGGACCCCAACCAGTAG
Upstream 100 bases:
>100_bases CGCCCTCAGGGGCGATGAATTTTCGATCAAAGGGCTTGGCTTTCCCCGCGGCGGCGGCAAGATGGTTTCCAGAGAAACCG ACCCGGGGAGTTTTCCAGAC
Downstream 100 bases:
>100_bases GCACTTGTCCCGGCGGAGGTGCGGCTGCGTTGCGAGCTGCCTTCCGCCGCCATAGGTGACCGTACGGATATTGCCATCGG TACTTGTCTCAAGCGGCTTT
Product: peptidase M28
Products: NA
Alternate protein names: LIE1 [H]
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MTSCLRGAASAAAIALCTFAAPAIAGPAEDKLIAQLLDEGLNRSDAMEIASELMDRIGPRLTNSENHRKAEDWAAAKFAS FGLKNIHREPFEFGLGWNLKSYSATMTSPRSLPLTVLPVAWSPPTGGTITAPVIVAPMTKVENFDAWKGKLAGRIVLVSL PGETSASADPVFERLSGEEIGKLDKYTLPRHDPEGLAMQVARRGFARKLSEFLKAEGALAMVRMTYRDGKLVHGEGYDFV PGQTLAVPAMDMAQEDYRRLVRLEKTGAAPQLSLSIDASFDDKDLMADNVIAEIPGSDPKAGYVMAGAHFDSWIAGDGAS DNGAGSVAVIEAARLLSKMGVKPKRTIRFALWSGEEQGLLGSKAYIEQHLATRPVDPALKGIDSYSAWRNAYPITPKPGY SQLKAYFNMDNGSGKFRGIYAEGNVAAAPILREWLAPFSSLGADKVVMSKTGGTDHVYLQAIGLPGYQFIQDPLDYESRV HHSSLDTLDHMRADDMRQASVILAGMLLQAATSEKELPRSPLPTKPDATDPFKVQDPNQ
Sequences:
>Translated_539_residues MTSCLRGAASAAAIALCTFAAPAIAGPAEDKLIAQLLDEGLNRSDAMEIASELMDRIGPRLTNSENHRKAEDWAAAKFAS FGLKNIHREPFEFGLGWNLKSYSATMTSPRSLPLTVLPVAWSPPTGGTITAPVIVAPMTKVENFDAWKGKLAGRIVLVSL PGETSASADPVFERLSGEEIGKLDKYTLPRHDPEGLAMQVARRGFARKLSEFLKAEGALAMVRMTYRDGKLVHGEGYDFV PGQTLAVPAMDMAQEDYRRLVRLEKTGAAPQLSLSIDASFDDKDLMADNVIAEIPGSDPKAGYVMAGAHFDSWIAGDGAS DNGAGSVAVIEAARLLSKMGVKPKRTIRFALWSGEEQGLLGSKAYIEQHLATRPVDPALKGIDSYSAWRNAYPITPKPGY SQLKAYFNMDNGSGKFRGIYAEGNVAAAPILREWLAPFSSLGADKVVMSKTGGTDHVYLQAIGLPGYQFIQDPLDYESRV HHSSLDTLDHMRADDMRQASVILAGMLLQAATSEKELPRSPLPTKPDATDPFKVQDPNQ >Mature_538_residues TSCLRGAASAAAIALCTFAAPAIAGPAEDKLIAQLLDEGLNRSDAMEIASELMDRIGPRLTNSENHRKAEDWAAAKFASF GLKNIHREPFEFGLGWNLKSYSATMTSPRSLPLTVLPVAWSPPTGGTITAPVIVAPMTKVENFDAWKGKLAGRIVLVSLP GETSASADPVFERLSGEEIGKLDKYTLPRHDPEGLAMQVARRGFARKLSEFLKAEGALAMVRMTYRDGKLVHGEGYDFVP GQTLAVPAMDMAQEDYRRLVRLEKTGAAPQLSLSIDASFDDKDLMADNVIAEIPGSDPKAGYVMAGAHFDSWIAGDGASD NGAGSVAVIEAARLLSKMGVKPKRTIRFALWSGEEQGLLGSKAYIEQHLATRPVDPALKGIDSYSAWRNAYPITPKPGYS QLKAYFNMDNGSGKFRGIYAEGNVAAAPILREWLAPFSSLGADKVVMSKTGGTDHVYLQAIGLPGYQFIQDPLDYESRVH HSSLDTLDHMRADDMRQASVILAGMLLQAATSEKELPRSPLPTKPDATDPFKVQDPNQ
Specific function: A leucine-specific metalloprotease that plays a role in controlling the amount of leupeptin during colony development. Degrades leupeptin into three components, acetyl-leucine, leucine and argininal [H]
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M28 family. M28A subfamily [H]
Homologues:
Organism=Homo sapiens, GI7706387, Length=509, Percent_Identity=26.5225933202358, Blast_Score=120, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR007484 - InterPro: IPR002884 [H]
Pfam domain/function: PF01483 P_proprotein; PF04389 Peptidase_M28 [H]
EC number: NA
Molecular weight: Translated: 58222; Mature: 58091
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSCLRGAASAAAIALCTFAAPAIAGPAEDKLIAQLLDEGLNRSDAMEIASELMDRIGPR CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC LTNSENHRKAEDWAAAKFASFGLKNIHREPFEFGLGWNLKSYSATMTSPRSLPLTVLPVA CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEECCCCCCCCEEEEEEE WSPPTGGTITAPVIVAPMTKVENFDAWKGKLAGRIVLVSLPGETSASADPVFERLSGEEI ECCCCCCEEECCEEEECHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCHHH GKLDKYTLPRHDPEGLAMQVARRGFARKLSEFLKAEGALAMVRMTYRDGKLVHGEGYDFV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCCCC PGQTLAVPAMDMAQEDYRRLVRLEKTGAAPQLSLSIDASFDDKDLMADNVIAEIPGSDPK CCCEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCHHEECCCCCCC AGYVMAGAHFDSWIAGDGASDNGAGSVAVIEAARLLSKMGVKPKRTIRFALWSGEEQGLL CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC GSKAYIEQHLATRPVDPALKGIDSYSAWRNAYPITPKPGYSQLKAYFNMDNGSGKFRGIY CHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCEEEEE AEGNVAAAPILREWLAPFSSLGADKVVMSKTGGTDHVYLQAIGLPGYQFIQDPLDYESRV ECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCHHHHH HHSSLDTLDHMRADDMRQASVILAGMLLQAATSEKELPRSPLPTKPDATDPFKVQDPNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSCLRGAASAAAIALCTFAAPAIAGPAEDKLIAQLLDEGLNRSDAMEIASELMDRIGPR CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC LTNSENHRKAEDWAAAKFASFGLKNIHREPFEFGLGWNLKSYSATMTSPRSLPLTVLPVA CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEECCCCCCCCEEEEEEE WSPPTGGTITAPVIVAPMTKVENFDAWKGKLAGRIVLVSLPGETSASADPVFERLSGEEI ECCCCCCEEECCEEEECHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCHHH GKLDKYTLPRHDPEGLAMQVARRGFARKLSEFLKAEGALAMVRMTYRDGKLVHGEGYDFV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCCCC PGQTLAVPAMDMAQEDYRRLVRLEKTGAAPQLSLSIDASFDDKDLMADNVIAEIPGSDPK CCCEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCHHEECCCCCCC AGYVMAGAHFDSWIAGDGASDNGAGSVAVIEAARLLSKMGVKPKRTIRFALWSGEEQGLL CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC GSKAYIEQHLATRPVDPALKGIDSYSAWRNAYPITPKPGYSQLKAYFNMDNGSGKFRGIY CHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCEEEEE AEGNVAAAPILREWLAPFSSLGADKVVMSKTGGTDHVYLQAIGLPGYQFIQDPLDYESRV ECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCHHHHH HHSSLDTLDHMRADDMRQASVILAGMLLQAATSEKELPRSPLPTKPDATDPFKVQDPNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA