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The map label for this gene is xylA

Identifier: 87198781

GI number: 87198781

Start: 805250

End: 806563

Strand: Direct

Name: xylA

Synonym: Saro_0757

Alternate gene names: 87198781

Gene position: 805250-806563 (Clockwise)

Preceding gene: 87198780

Following gene: 87198785

Centisome position: 22.61

GC content: 63.24

Gene sequence:

>1314_bases
ATGTCTGCCGATTACTTCGCCGATTTCCAGACGGTCCGCTACGAAGGGCCGGACAGCGACAATGACTTTGCCTATCGCTG
GTACGACAAGGACCGCGTGATCCTGGGCAAGCGTATGGAGGATCACCTGCGCTTTGCCGTCTGCATGTGGCACACCTTCT
GCTGGCCCGGCAGCGACGTGTTCGGTGCAGGCACTTTTACCCGCCCCTGGCTGCAAGGCCCGATGGACGCGAGGAACGCA
GCCGCCAAGCGCGAGGCTGCGCTCGCCTTCGTCGAGAAGCTCGATGTTCCCTTCTACTGCTTCCATGACGTCGACGTGAT
GGCCGAGGCCGAAGGCATTGGCGAATTCCGATCGAGCTTTGCCGAAGCGGTCGATCATCTCGAGGAGCTGCAGGGCAAGC
ACGGCCGCAAGCTGCTGTGGGGTACCGCCAATCTGTTCGGTCACCCTCGCTACATGGCAGGCGCCGCGACCAATCCCGAT
CCGGAAGTCTTCGCCTGGGGCGCAAGCCAGGTGCGCGACGCGCTGGAAGCGACCCATCGCCTGGGCGGCGCGAACTACGT
GCTGTGGGGCGGCCGCGAAGGCTATGACAGCATCCTCAACACCGAGATCGGGATCGAGCAGGAGAACTTCGGGCGCTTCC
TGTCGCTGGTCGTGGATCACAAGCATCGCATCGGCTTCAAGGGCACGATCCTCATCGAGCCCAAGCCGCACGAGCCGACC
AAGCACCAGTACGATTTCGACACCCAGACCGTATTCGGCTTTCTCAAGCGCTTCGGGCTGGAAAGCGAAGTGAAGGTGAA
CATCGAGGCGAATCATGCAACGCTCTCGGGCCATACTTTCGAACACGAACTGGCCATGGCGCGCGCTCTCGGCATTCTCG
GCTCGATCGACGCCAACCGTGGCGACCACCAGAACGGCTGGGATACCGACCAATTCCCCAATTCGGTGGAAGAACTGACG
CTTGCCATGCTTGAACTGATCCGTGCGGGCGGCTTCACCGATGGCGGCTTCAATTTCGACGCCAAGGTGCGCCGCCAGTC
GATCGACGCGGCCGACCTGTTCCACGGCCACATCGGCGGCATCGACACCATCGCGCACGCGCTGGTCAAGGCGGCGGCGC
TGATCGAGGACGGCAAGCTTGATGCCTTCCGCGCCGAACGCTACGCGGGGTGGCAGGGGGAACTCGGTCGCAAGATCCAC
GCAGACGGCACCACGCTGGCCGACATCGCCGACATCGCGGTAGCGCGCGACCTCGCGCCGGTGCGCAGGTCGGGCAGGCA
GGAGTGGTGTGAAAACCTGATCAACCGCGTTTGA

Upstream 100 bases:

>100_bases
CCATCGAACCCGACCGGGACCTGGCGGAACGCCTGGCCCCGAAGCTTGCCGCATTCCGCGCCGCCTATGGCGCCGTTCGC
CATCTCTGAAAGGAAGAACG

Downstream 100 bases:

>100_bases
TCCAGCGTCGGTAGGACACGGAAAAGCCGGGGGCATTACGTTTCCGGCTTTTTCCTTTTTTTGGGGTGGCGCCTGCGCTC
CTCGAGCCAGAAAATCGGCA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSADYFADFQTVRYEGPDSDNDFAYRWYDKDRVILGKRMEDHLRFAVCMWHTFCWPGSDVFGAGTFTRPWLQGPMDARNA
AAKREAALAFVEKLDVPFYCFHDVDVMAEAEGIGEFRSSFAEAVDHLEELQGKHGRKLLWGTANLFGHPRYMAGAATNPD
PEVFAWGASQVRDALEATHRLGGANYVLWGGREGYDSILNTEIGIEQENFGRFLSLVVDHKHRIGFKGTILIEPKPHEPT
KHQYDFDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANRGDHQNGWDTDQFPNSVEELT
LAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIH
ADGTTLADIADIAVARDLAPVRRSGRQEWCENLINRV

Sequences:

>Translated_437_residues
MSADYFADFQTVRYEGPDSDNDFAYRWYDKDRVILGKRMEDHLRFAVCMWHTFCWPGSDVFGAGTFTRPWLQGPMDARNA
AAKREAALAFVEKLDVPFYCFHDVDVMAEAEGIGEFRSSFAEAVDHLEELQGKHGRKLLWGTANLFGHPRYMAGAATNPD
PEVFAWGASQVRDALEATHRLGGANYVLWGGREGYDSILNTEIGIEQENFGRFLSLVVDHKHRIGFKGTILIEPKPHEPT
KHQYDFDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANRGDHQNGWDTDQFPNSVEELT
LAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIH
ADGTTLADIADIAVARDLAPVRRSGRQEWCENLINRV
>Mature_436_residues
SADYFADFQTVRYEGPDSDNDFAYRWYDKDRVILGKRMEDHLRFAVCMWHTFCWPGSDVFGAGTFTRPWLQGPMDARNAA
AKREAALAFVEKLDVPFYCFHDVDVMAEAEGIGEFRSSFAEAVDHLEELQGKHGRKLLWGTANLFGHPRYMAGAATNPDP
EVFAWGASQVRDALEATHRLGGANYVLWGGREGYDSILNTEIGIEQENFGRFLSLVVDHKHRIGFKGTILIEPKPHEPTK
HQYDFDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANRGDHQNGWDTDQFPNSVEELTL
AMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIHA
DGTTLADIADIAVARDLAPVRRSGRQEWCENLINRV

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family

Homologues:

Organism=Escherichia coli, GI1789988, Length=433, Percent_Identity=62.8175519630485, Blast_Score=566, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XYLA_NOVAD (Q2GAB9)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_496038.1
- ProteinModelPortal:   Q2GAB9
- SMR:   Q2GAB9
- STRING:   Q2GAB9
- GeneID:   3918581
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_0757
- NMPDR:   fig|48935.1.peg.1772
- eggNOG:   COG2115
- HOGENOM:   HBG297199
- OMA:   LLGWDTD
- PhylomeDB:   Q2GAB9
- ProtClustDB:   PRK05474
- BioCyc:   NARO279238:SARO_0757-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00455
- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998
- Gene3D:   G3DSA:3.20.20.150
- PRINTS:   PR00688
- TIGRFAMs:   TIGR02630

Pfam domain/function: PF01261 AP_endonuc_2; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: =5.3.1.5

Molecular weight: Translated: 48845; Mature: 48714

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS51415 XYLOSE_ISOMERASE; PS00172 XYLOSE_ISOMERASE_1

Important sites: ACT_SITE 102-102 ACT_SITE 105-105

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADYFADFQTVRYEGPDSDNDFAYRWYDKDRVILGKRMEDHLRFAVCMWHTFCWPGSDV
CCCCHHCCCEEEEECCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
FGAGTFTRPWLQGPMDARNAAAKREAALAFVEKLDVPFYCFHDVDVMAEAEGIGEFRSSF
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
AEAVDHLEELQGKHGRKLLWGTANLFGHPRYMAGAATNPDPEVFAWGASQVRDALEATHR
HHHHHHHHHHCCCCCCEEEEECHHHCCCCCEECCCCCCCCCCEEECCHHHHHHHHHHHHH
LGGANYVLWGGREGYDSILNTEIGIEQENFGRFLSLVVDHKHRIGFKGTILIEPKPHEPT
CCCCCEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
KHQYDFDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANR
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEECEEEECCCCHHHHHHHHHHHHHHHCCCCCC
GDHQNGWDTDQFPNSVEELTLAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCC
IDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIHADGTTLADIADIAVARDLAP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
VRRSGRQEWCENLINRV
HHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
SADYFADFQTVRYEGPDSDNDFAYRWYDKDRVILGKRMEDHLRFAVCMWHTFCWPGSDV
CCCHHCCCEEEEECCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
FGAGTFTRPWLQGPMDARNAAAKREAALAFVEKLDVPFYCFHDVDVMAEAEGIGEFRSSF
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
AEAVDHLEELQGKHGRKLLWGTANLFGHPRYMAGAATNPDPEVFAWGASQVRDALEATHR
HHHHHHHHHHCCCCCCEEEEECHHHCCCCCEECCCCCCCCCCEEECCHHHHHHHHHHHHH
LGGANYVLWGGREGYDSILNTEIGIEQENFGRFLSLVVDHKHRIGFKGTILIEPKPHEPT
CCCCCEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
KHQYDFDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANR
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEECEEEECCCCHHHHHHHHHHHHHHHCCCCCC
GDHQNGWDTDQFPNSVEELTLAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCC
IDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIHADGTTLADIADIAVARDLAP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
VRRSGRQEWCENLINRV
HHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA