Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198738
Identifier: 87198738
GI number: 87198738
Start: 754513
End: 755670
Strand: Direct
Name: 87198738
Synonym: Saro_0714
Alternate gene names: NA
Gene position: 754513-755670 (Clockwise)
Preceding gene: 87198737
Following gene: 87198739
Centisome position: 21.18
GC content: 65.2
Gene sequence:
>1158_bases ATGGCGCTCTACGAACCGTTCCCGAACTACATCTGGAATCTCTCGGTTTCGATCGCGATGGAGAGCGGCGGGCAGATCGG CGAAATCGTCGACATGTGCCAGCCGATTATCGATGCCGCCTCCAACGGCGGCGATGCCGGCACGCCGCAGTTCATGAAGC AGTGGGCCGCCTATGGCGACAAGCTGATCGCGCTTGCCGCCGAGGACGAGGCTAGGGGGCGCATGTTCTCCGCCTCGAAC AAGCTCGAGCGGGCTTCGCTCTACCTGCTGGTGGCAGAGCGCATGCAGGGTCATGGCGCACCGGGCCGCAAGGAGAGCTA TGCGAAGGCGCGCGATGCCTTCGACAAGTCCACCGCGCTCGGCAAGATCAACCGCGAGCGGGTGGAGATCCCGCTCGGCA AAGGCACGATGCCCGCGCTCTACACTCGCGCGCCGGGCAACGGCCCACATCCGGTTGTCGTTTATTGCAACGGCCTCGAT AGCTGCAAGGAGCTGCTCTACTGGAGCCGCCTGCCCGAAGCGCTGGCCCGGCGCGGCATTTCGACAATCTGCGTCGACCA GCCCGGTTCGGGCGAGGCCCTGCGCCTCCAGGACCTGCCGGTAGACCCGCATTCGGAGAACTGGGCCTCGAAGGCGGTGG ACTGGCTGGAGCAGCAGCCCGACGTCGACCCCAAGCGCATCGGCATGACCGGCATCAGCCTCGGCGGCCACTTCGCCCCC CGCGCCGTTGCCTACGAGCCGCGCTTTGCCTCGGGCGCGGTATGGGGTGCCAACCACAACTGGCGGGAGGTGCAGGACAA GCGCCTCAAGCGCGAAGGCGAAAACCCGGTGCCCCACTATTGGGCGCATGTGATGTGGGCGTTCGGTGCCAGCGACATGG ACGATTTCATGGTCAAGTCAGAGGACATGAACCTGAATGGCCACATGGACCGGATCAAGGTGCCGTTCCTCGTCACCCAT GGGGCCGACGACCGCCAGATCAGCGTTTCCTACGCCGACGACCTCTATGACCAGCTCGTCAATTCGCCGCGCCGCGAGAA GGTGATCTTCACCGCCCGCGAAGGTGGCGTCGAACACGTCGGCGCCGACAACATGGCCTATGGCCGCGACTGCATTGCCG ACTGGTTCGCCGAGACGTTGGGCGGTACGACTGCCTGA
Upstream 100 bases:
>100_bases GATGGTCATGGACCAGTGGGGCATCGGCACCGGCGGCCCGCAGACGTTGCCGCACCCGCACGCCAACCCCGGCCTGTTCC AGACGGCAGAGGCCTGATCC
Downstream 100 bases:
>100_bases ATGCAGCCATCAGCCTACATCCGCCGCGAGACCGCCGTCAGCATCGTCATCAACCTGGTGTTGAGTGCGCTGTTTTTCAT GGCGGTTTTCGGGCGGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MALYEPFPNYIWNLSVSIAMESGGQIGEIVDMCQPIIDAASNGGDAGTPQFMKQWAAYGDKLIALAAEDEARGRMFSASN KLERASLYLLVAERMQGHGAPGRKESYAKARDAFDKSTALGKINRERVEIPLGKGTMPALYTRAPGNGPHPVVVYCNGLD SCKELLYWSRLPEALARRGISTICVDQPGSGEALRLQDLPVDPHSENWASKAVDWLEQQPDVDPKRIGMTGISLGGHFAP RAVAYEPRFASGAVWGANHNWREVQDKRLKREGENPVPHYWAHVMWAFGASDMDDFMVKSEDMNLNGHMDRIKVPFLVTH GADDRQISVSYADDLYDQLVNSPRREKVIFTAREGGVEHVGADNMAYGRDCIADWFAETLGGTTA
Sequences:
>Translated_385_residues MALYEPFPNYIWNLSVSIAMESGGQIGEIVDMCQPIIDAASNGGDAGTPQFMKQWAAYGDKLIALAAEDEARGRMFSASN KLERASLYLLVAERMQGHGAPGRKESYAKARDAFDKSTALGKINRERVEIPLGKGTMPALYTRAPGNGPHPVVVYCNGLD SCKELLYWSRLPEALARRGISTICVDQPGSGEALRLQDLPVDPHSENWASKAVDWLEQQPDVDPKRIGMTGISLGGHFAP RAVAYEPRFASGAVWGANHNWREVQDKRLKREGENPVPHYWAHVMWAFGASDMDDFMVKSEDMNLNGHMDRIKVPFLVTH GADDRQISVSYADDLYDQLVNSPRREKVIFTAREGGVEHVGADNMAYGRDCIADWFAETLGGTTA >Mature_384_residues ALYEPFPNYIWNLSVSIAMESGGQIGEIVDMCQPIIDAASNGGDAGTPQFMKQWAAYGDKLIALAAEDEARGRMFSASNK LERASLYLLVAERMQGHGAPGRKESYAKARDAFDKSTALGKINRERVEIPLGKGTMPALYTRAPGNGPHPVVVYCNGLDS CKELLYWSRLPEALARRGISTICVDQPGSGEALRLQDLPVDPHSENWASKAVDWLEQQPDVDPKRIGMTGISLGGHFAPR AVAYEPRFASGAVWGANHNWREVQDKRLKREGENPVPHYWAHVMWAFGASDMDDFMVKSEDMNLNGHMDRIKVPFLVTHG ADDRQISVSYADDLYDQLVNSPRREKVIFTAREGGVEHVGADNMAYGRDCIADWFAETLGGTTA
Specific function: L-nicotine is used as a growth substrate. Plays a role in nicotine catabolism by cleaving a C-C bond in 2,6- dihydroxypseudooxyicotine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0255 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010520 [H]
Pfam domain/function: PF06500 DUF1100 [H]
EC number: NA
Molecular weight: Translated: 42503; Mature: 42372
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: PS00560 CARBOXYPEPT_SER_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYEPFPNYIWNLSVSIAMESGGQIGEIVDMCQPIIDAASNGGDAGTPQFMKQWAAYGD CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC KLIALAAEDEARGRMFSASNKLERASLYLLVAERMQGHGAPGRKESYAKARDAFDKSTAL EEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH GKINRERVEIPLGKGTMPALYTRAPGNGPHPVVVYCNGLDSCKELLYWSRLPEALARRGI CCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC STICVDQPGSGEALRLQDLPVDPHSENWASKAVDWLEQQPDVDPKRIGMTGISLGGHFAP CEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCEEECCCCCCCC RAVAYEPRFASGAVWGANHNWREVQDKRLKREGENPVPHYWAHVMWAFGASDMDDFMVKS CEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHEEC EDMNLNGHMDRIKVPFLVTHGADDRQISVSYADDLYDQLVNSPRREKVIFTAREGGVEHV CCCCCCCCCCEEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC GADNMAYGRDCIADWFAETLGGTTA CCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure ALYEPFPNYIWNLSVSIAMESGGQIGEIVDMCQPIIDAASNGGDAGTPQFMKQWAAYGD CCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC KLIALAAEDEARGRMFSASNKLERASLYLLVAERMQGHGAPGRKESYAKARDAFDKSTAL EEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH GKINRERVEIPLGKGTMPALYTRAPGNGPHPVVVYCNGLDSCKELLYWSRLPEALARRGI CCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC STICVDQPGSGEALRLQDLPVDPHSENWASKAVDWLEQQPDVDPKRIGMTGISLGGHFAP CEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCEEECCCCCCCC RAVAYEPRFASGAVWGANHNWREVQDKRLKREGENPVPHYWAHVMWAFGASDMDDFMVKS CEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHEEC EDMNLNGHMDRIKVPFLVTHGADDRQISVSYADDLYDQLVNSPRREKVIFTAREGGVEHV CCCCCCCCCCEEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC GADNMAYGRDCIADWFAETLGGTTA CCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11514508; 12618462 [H]