Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is glnD
Identifier: 87198706
GI number: 87198706
Start: 719453
End: 722191
Strand: Direct
Name: glnD
Synonym: Saro_0682
Alternate gene names: 87198706
Gene position: 719453-722191 (Clockwise)
Preceding gene: 87198705
Following gene: 87198707
Centisome position: 20.2
GC content: 65.64
Gene sequence:
>2739_bases ATGCTTCCCCGGATCGCCAACCAGCGTGCCATCGTCGACCGGCGCGCCCTTGCCGACGCCGTCTCTGCTGCCTTTGCGGA GCAGGGCGACAGGTCCCGTCCGGCGGTGGTGGAACTCCTGCGCGGCGCGCTCGATTCAGGGCGCGCGGAACTTGCCCGCC GGCTCGAGGCGCGCCCTTCGGCCGGCACCGAATGCGCGCATGGGCAGGCGTTCCTCGTCGACCAGCTCGTTCGCGTGATC CACGATCATGTCGTGGGCAAGGTCTATCGCGCCAGCAACCGTTCGACGGGCGAGCGCATCGCGATCATCGCCGTGGGCGG CTACGGTCGCGGAGAGATGGCGCCGCATTCCGACGTCGACATTGCCTTCGTCACGCCGATCAAGCCGACCTCGTGGTGCG AACAGGTGATCGAGGCGATTCTCTATTTCCTGTGGGACCTCGGCCTCAAGGTCGGTCATTCCAGCCGCTCGCTCGACGAG GTCGTGCGCATGGCCAAGAGCGACCTGACGATCCGTACCGCGCTGCTTGAAGGGCGCTACGTCTGGGGTGACCGCGACTT GTTCGATGCCGCTTCTGCCCGGTTCTGGAACGAAGTGGTCAACGGCACCGAAAAGCAGTTCGTCGCCGAAAAACTGCAGG AGCGCAACGAGCGTCACAAGCGGCTGGGCGACAGCCGCTATGTCGTGGAACCCAACGTCAAGGAGGGCAAGGGCGGGTTG CGTGACCTGCACACGCTCTACTGGATCGGCAAATATATTCACAAGGTGCGCGATGCCTCGGAACTGGTCGACGTCGGCCT GTTGACGGCAGAGGAATATCGCGCGTTCCGCCGCGCCGAGAATTTCTTCTGGGCGGTGCGCTGTCACCTCCACGCGATCA CTCGCCGTGCCGAGGATCGCCTGACCTTCGACCTCCAGCGCGAGGTCGCGATGCGCATGAACTTTGCGGACCGGCCGGGA AAGAGCGCGGTCGAGCGGTTCATGCAGTATTTCTTTCTCCAGGCGAAGCAGGTCGGTTCGCTTACCGGCGTCTTCCTCGC CCAGCTCGACGGGCAGTTCGCGCGCCAGAAGCGCAGCTTCTTCGCCTCGCTGCGCAGCCGTCGCAAGAAAGTGGGCCCGT TCTTCATCGAAGGCGGGAAGCTCGGCGTCCCAGCGGAAGATACCTTCCAGCAGGACCCGGTGCGCCTCGTCGAACTCTTC GCGGTGGCGGCCAGCGAAAAGGTCGAGATCCACCCGGAGGCCATGCGCCTGGCGCGGCGCGATGCTGGCCTGATCGATGC CGCGGTGCGCAAGGATCAGCGCGCGAACGCCCTGTTCCTCGATGTTCTGACCAGCCGCAACGATCCCGAGACGGTCCTGC GCTGGATGAACGAGGCAGGGGTGTTTGGCCGCTTCGTGCCCGATTTCGGCCGCGTCGTCGCGCAGATGCAGTTTGACATG TACCACCACTACACGGTGGACGAACACACGATCCGCGCCATCGGCCTGCTCGCCAGCATCGAGAAGGGCGAAGCCAAGGC CGACCATCCGCTGGCAAGCGAAGTCGTGGGCAAGGTCGCCTCGCGCCGGGTGCTCTACGTGGCCACGCTGCTCCACGACA TCGCCAAGGGTCGGCGCGGGGACCATTCAGTTCTTGGCGCGGAAGTCGCGATGAAGCTCTGCCCGAGGCTCGGCCTCTCG GCGGCGGAGACCGAACTGGTCGCATGGCTCGTGCGCTGGCACCTGCTGATGAGCGCGACCGCGTTCAAGCGCGATCTTGC CGACTACAAGACCATCGCCGATTTCGTGAACACTGTGCAGAGCCAGGAACGCCTGCGCCTCCTGCTGCTTCTGACCATCG TGGATATCCGGGCGGTGGGGCCCGGGGTGTGGAACTCCTGGAAGCGCCAACTCCTGGGCGATCTCTTCGTCTCGGCCGAG GAAGTCCTGCGCCTTGGCCACAAGCAGCACGGCCGGGCTGAGCGGATCATTGCCAAGAAGAAGGCGGTGGGCGCCATCCT CAAGGAGCGCGACAACCTCATCGGCACGGTTGGTCGCCAGCTTGGCGACGCCTACTGGATCGCCGAGCCGGAGGACATCA TCGCGCTCAATCTCCAGCAGATGGACCAGGCGCTGGGCGAGTTGCTCTCGGTCGAGGCGCACTGGTATCCCGCGCGCGGT GCCACGCTCGTCACGGTCCTCGCCGCGGACCATCCGGGCCTGTTCTATCGTATCGCGGGCGGCATCCACCTTGCGGGCGG CAACATCATCGATGCGCGCATCCACACTGCGCGCAACGGCACCGCTGTCGACAATTTCCTGGTGCAGGACCCGCTCGGGC GCCCGCTCAACGAGGCCAGCCAGATCGAGCGACTGAAGAACGCCATCGCCGATGCGCTTGCCAACCGGGTCAAGCTGGTG CCGCAGCTCGCCGCGCGGCCGCTTGCCCGTCCGCGAGCCGACGCATTCGACGTGCGGCCGATCGTGATCTTCGACAACAA GGCCTCGAACCGCTTCACCGTGATCGAGGTCGGTGCGCGCGACCGTCCCGCGCTGCTCAACCGGCTTGCCCGCGCTTTGT TCGAGGCCCGCCTGATCGTTCATTCCGCCCACATCGCCACATATGGCGAACGCGCGGTGGACACCTTCTACGTCACCGAC GTGCTGGGCGAGAAGGTTGACAGCGAGGCGCGGATGAAGGCGGTCGAGAAGCGGTTGCTGGAAGCGGCGGAGGACCGCAA GGTGAAGGACGCGGCGTGA
Upstream 100 bases:
>100_bases TACACGCGGGAATGGCTCGCGAGCGCGACCGCCTGAGCAATGCACCTGAACGCAACAGTTGTTGGCCGGTAACATCGCAA GGTCTAAAGGGGGAGGCATG
Downstream 100 bases:
>100_bases GCGTCCACACCTTGCGCCATCTCGCAATCCCACCTCGTGCTTCCTATCTCACGCTGCATGAGTGAAGCCGAATACCTTGG CGGCCGCCTGCTGCTTGCCA
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme
Number of amino acids: Translated: 912; Mature: 912
Protein sequence:
>912_residues MLPRIANQRAIVDRRALADAVSAAFAEQGDRSRPAVVELLRGALDSGRAELARRLEARPSAGTECAHGQAFLVDQLVRVI HDHVVGKVYRASNRSTGERIAIIAVGGYGRGEMAPHSDVDIAFVTPIKPTSWCEQVIEAILYFLWDLGLKVGHSSRSLDE VVRMAKSDLTIRTALLEGRYVWGDRDLFDAASARFWNEVVNGTEKQFVAEKLQERNERHKRLGDSRYVVEPNVKEGKGGL RDLHTLYWIGKYIHKVRDASELVDVGLLTAEEYRAFRRAENFFWAVRCHLHAITRRAEDRLTFDLQREVAMRMNFADRPG KSAVERFMQYFFLQAKQVGSLTGVFLAQLDGQFARQKRSFFASLRSRRKKVGPFFIEGGKLGVPAEDTFQQDPVRLVELF AVAASEKVEIHPEAMRLARRDAGLIDAAVRKDQRANALFLDVLTSRNDPETVLRWMNEAGVFGRFVPDFGRVVAQMQFDM YHHYTVDEHTIRAIGLLASIEKGEAKADHPLASEVVGKVASRRVLYVATLLHDIAKGRRGDHSVLGAEVAMKLCPRLGLS AAETELVAWLVRWHLLMSATAFKRDLADYKTIADFVNTVQSQERLRLLLLLTIVDIRAVGPGVWNSWKRQLLGDLFVSAE EVLRLGHKQHGRAERIIAKKKAVGAILKERDNLIGTVGRQLGDAYWIAEPEDIIALNLQQMDQALGELLSVEAHWYPARG ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEASQIERLKNAIADALANRVKLV PQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTD VLGEKVDSEARMKAVEKRLLEAAEDRKVKDAA
Sequences:
>Translated_912_residues MLPRIANQRAIVDRRALADAVSAAFAEQGDRSRPAVVELLRGALDSGRAELARRLEARPSAGTECAHGQAFLVDQLVRVI HDHVVGKVYRASNRSTGERIAIIAVGGYGRGEMAPHSDVDIAFVTPIKPTSWCEQVIEAILYFLWDLGLKVGHSSRSLDE VVRMAKSDLTIRTALLEGRYVWGDRDLFDAASARFWNEVVNGTEKQFVAEKLQERNERHKRLGDSRYVVEPNVKEGKGGL RDLHTLYWIGKYIHKVRDASELVDVGLLTAEEYRAFRRAENFFWAVRCHLHAITRRAEDRLTFDLQREVAMRMNFADRPG KSAVERFMQYFFLQAKQVGSLTGVFLAQLDGQFARQKRSFFASLRSRRKKVGPFFIEGGKLGVPAEDTFQQDPVRLVELF AVAASEKVEIHPEAMRLARRDAGLIDAAVRKDQRANALFLDVLTSRNDPETVLRWMNEAGVFGRFVPDFGRVVAQMQFDM YHHYTVDEHTIRAIGLLASIEKGEAKADHPLASEVVGKVASRRVLYVATLLHDIAKGRRGDHSVLGAEVAMKLCPRLGLS AAETELVAWLVRWHLLMSATAFKRDLADYKTIADFVNTVQSQERLRLLLLLTIVDIRAVGPGVWNSWKRQLLGDLFVSAE EVLRLGHKQHGRAERIIAKKKAVGAILKERDNLIGTVGRQLGDAYWIAEPEDIIALNLQQMDQALGELLSVEAHWYPARG ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEASQIERLKNAIADALANRVKLV PQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTD VLGEKVDSEARMKAVEKRLLEAAEDRKVKDAA >Mature_912_residues MLPRIANQRAIVDRRALADAVSAAFAEQGDRSRPAVVELLRGALDSGRAELARRLEARPSAGTECAHGQAFLVDQLVRVI HDHVVGKVYRASNRSTGERIAIIAVGGYGRGEMAPHSDVDIAFVTPIKPTSWCEQVIEAILYFLWDLGLKVGHSSRSLDE VVRMAKSDLTIRTALLEGRYVWGDRDLFDAASARFWNEVVNGTEKQFVAEKLQERNERHKRLGDSRYVVEPNVKEGKGGL RDLHTLYWIGKYIHKVRDASELVDVGLLTAEEYRAFRRAENFFWAVRCHLHAITRRAEDRLTFDLQREVAMRMNFADRPG KSAVERFMQYFFLQAKQVGSLTGVFLAQLDGQFARQKRSFFASLRSRRKKVGPFFIEGGKLGVPAEDTFQQDPVRLVELF AVAASEKVEIHPEAMRLARRDAGLIDAAVRKDQRANALFLDVLTSRNDPETVLRWMNEAGVFGRFVPDFGRVVAQMQFDM YHHYTVDEHTIRAIGLLASIEKGEAKADHPLASEVVGKVASRRVLYVATLLHDIAKGRRGDHSVLGAEVAMKLCPRLGLS AAETELVAWLVRWHLLMSATAFKRDLADYKTIADFVNTVQSQERLRLLLLLTIVDIRAVGPGVWNSWKRQLLGDLFVSAE EVLRLGHKQHGRAERIIAKKKAVGAILKERDNLIGTVGRQLGDAYWIAEPEDIIALNLQQMDQALGELLSVEAHWYPARG ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEASQIERLKNAIADALANRVKLV PQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTD VLGEKVDSEARMKAVEKRLLEAAEDRKVKDAA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family
Homologues:
Organism=Escherichia coli, GI1786363, Length=831, Percent_Identity=32.3706377858002, Blast_Score=409, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLND_NOVAD (Q2GAJ4)
Other databases:
- EMBL: CP000248 - RefSeq: YP_495963.1 - ProteinModelPortal: Q2GAJ4 - STRING: Q2GAJ4 - GeneID: 3918107 - GenomeReviews: CP000248_GR - KEGG: nar:Saro_0682 - NMPDR: fig|48935.1.peg.1921 - eggNOG: COG2844 - HOGENOM: HBG687872 - OMA: MQHDLFH - PhylomeDB: Q2GAJ4 - ProtClustDB: PRK05092 - BioCyc: NARO279238:SARO_0682-MONOMER - HAMAP: MF_00277 - InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 - PANTHER: PTHR13734:SF1 - PIRSF: PIRSF006288 - SMART: SM00471 - TIGRFAMs: TIGR01693
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2
EC number: =2.7.7.59
Molecular weight: Translated: 101973; Mature: 101973
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPRIANQRAIVDRRALADAVSAAFAEQGDRSRPAVVELLRGALDSGRAELARRLEARPS CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC AGTECAHGQAFLVDQLVRVIHDHVVGKVYRASNRSTGERIAIIAVGGYGRGEMAPHSDVD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC IAFVTPIKPTSWCEQVIEAILYFLWDLGLKVGHSSRSLDEVVRMAKSDLTIRTALLEGRY EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCE VWGDRDLFDAASARFWNEVVNGTEKQFVAEKLQERNERHKRLGDSRYVVEPNVKEGKGGL EECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH RDLHTLYWIGKYIHKVRDASELVDVGLLTAEEYRAFRRAENFFWAVRCHLHAITRRAEDR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTFDLQREVAMRMNFADRPGKSAVERFMQYFFLQAKQVGSLTGVFLAQLDGQFARQKRSF HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FASLRSRRKKVGPFFIEGGKLGVPAEDTFQQDPVRLVELFAVAASEKVEIHPEAMRLARR HHHHHHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHH DAGLIDAAVRKDQRANALFLDVLTSRNDPETVLRWMNEAGVFGRFVPDFGRVVAQMQFDM CCCHHHHHHHCCCCCCEEEEEHHHCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHH YHHYTVDEHTIRAIGLLASIEKGEAKADHPLASEVVGKVASRRVLYVATLLHDIAKGRRG HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DHSVLGAEVAMKLCPRLGLSAAETELVAWLVRWHLLMSATAFKRDLADYKTIADFVNTVQ CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQERLRLLLLLTIVDIRAVGPGVWNSWKRQLLGDLFVSAEEVLRLGHKQHGRAERIIAKK HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHH KAVGAILKERDNLIGTVGRQLGDAYWIAEPEDIIALNLQQMDQALGELLSVEAHWYPARG HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEEECHHHHHHHHHHHHHHHCCEECCCC ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEAS CEEEEEEECCCCCEEEEEECCEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHH QIERLKNAIADALANRVKLVPQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCC DRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVDSEARMKAVEKRLL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH EAAEDRKVKDAA HHHHCCCCCCCC >Mature Secondary Structure MLPRIANQRAIVDRRALADAVSAAFAEQGDRSRPAVVELLRGALDSGRAELARRLEARPS CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC AGTECAHGQAFLVDQLVRVIHDHVVGKVYRASNRSTGERIAIIAVGGYGRGEMAPHSDVD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC IAFVTPIKPTSWCEQVIEAILYFLWDLGLKVGHSSRSLDEVVRMAKSDLTIRTALLEGRY EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCE VWGDRDLFDAASARFWNEVVNGTEKQFVAEKLQERNERHKRLGDSRYVVEPNVKEGKGGL EECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH RDLHTLYWIGKYIHKVRDASELVDVGLLTAEEYRAFRRAENFFWAVRCHLHAITRRAEDR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTFDLQREVAMRMNFADRPGKSAVERFMQYFFLQAKQVGSLTGVFLAQLDGQFARQKRSF HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FASLRSRRKKVGPFFIEGGKLGVPAEDTFQQDPVRLVELFAVAASEKVEIHPEAMRLARR HHHHHHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHH DAGLIDAAVRKDQRANALFLDVLTSRNDPETVLRWMNEAGVFGRFVPDFGRVVAQMQFDM CCCHHHHHHHCCCCCCEEEEEHHHCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHH YHHYTVDEHTIRAIGLLASIEKGEAKADHPLASEVVGKVASRRVLYVATLLHDIAKGRRG HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DHSVLGAEVAMKLCPRLGLSAAETELVAWLVRWHLLMSATAFKRDLADYKTIADFVNTVQ CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQERLRLLLLLTIVDIRAVGPGVWNSWKRQLLGDLFVSAEEVLRLGHKQHGRAERIIAKK HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHH KAVGAILKERDNLIGTVGRQLGDAYWIAEPEDIIALNLQQMDQALGELLSVEAHWYPARG HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEEECHHHHHHHHHHHHHHHCCEECCCC ATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDPLGRPLNEAS CEEEEEEECCCCCEEEEEECCEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHH QIERLKNAIADALANRVKLVPQLAARPLARPRADAFDVRPIVIFDNKASNRFTVIEVGAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCC DRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVDSEARMKAVEKRLL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH EAAEDRKVKDAA HHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA