Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yfiQ [C]
Identifier: 87198698
GI number: 87198698
Start: 709795
End: 711912
Strand: Direct
Name: yfiQ [C]
Synonym: Saro_0674
Alternate gene names: 87198698
Gene position: 709795-711912 (Clockwise)
Preceding gene: 87198697
Following gene: 87198705
Centisome position: 19.93
GC content: 66.19
Gene sequence:
>2118_bases ATGACCGGAACGAGTCTTTCCCACGCCGCGCTCGATCGTTTCCTGCGCCCGAAGTCGGTCGCTGTCGTTGGTGCGTCGGA CAAGCCGGGTGCGCTCGGGGCCACGCTGCTCACCAATCTCGACCGTAATGGCTATGCCGGCGCGGTCTATCCGGTGAACC CCAAGCGCGACGAGATCATGGGCAAGCGCTGCTATGCCTCGGTCGGGGCGCTCCCCGAAGGCGTCGACGTCGCTGTCCTG GCAATCCCGCGCGCAGGCGTGCTCGAGGCGGTCAAGGGCCTGGCTGATCGCAAGTGCGGCGGCGTGGTGATCTTCTCGGC CGGGTTTGCCGAAGGCGGCGAGGAAGGACTTGCCGAACAGCGCGAGATCGCGCGTATCGCGCATGAAGCGGGCATGGTCG TCGAAGGGCCGAACTGCCTTGGCCTCGTCAACTATGTCGATCGCATTCCCCTGACCTTCGTGGAAACCAATGCCGTGCCG CCCGCTGGCAAGCGCGCCATCGGCATCGTCTCGCAGTCGGGCGCGATGGCGGCGGTGCTGGGCACGATGCTGCTCGCCCG CGATGCTGGCGTGTCCTATTCGGTTTCGACCGGCAACGAGGCCGCCAGCGGCGTCGAGGACTATGTCGATTGGCTGGTGG ATCAGGACGACACCCACGTGATCGCCATGATCGTGGAACAGTTCCGCAAGCCACAGGCGTTCCTTGCTGCCGCGCGCCGC GCAAAGGCGGCGGGCAAGCCAGTCGTCCTGCTCCACCCCGGAAAATCCAGCGCCGCACGCGAATCCGCCGCGACTCATAC GGGCGCAATGGCCGGCGACTACAAGCTCATGCGCGCCATGGTTGCGCGCGCGGGCGTGATCTTCGCCGAAACGCTGGAAG AACTGGGTGACATTGCCGAGATCGCGGTGCGCTGCCCCGCGCTGCCTTCGGGCAAGACGGCGGTCCTGGGCGAATCGGGC GCCTTCAAGGCGCTAACGCTCGACCTGGCCGAGGAGCTGGACCTGCCGCTGGCGGATCTCCACGATGACGATTCGCCGCT GCTGCGCGCCGCACTCCCGCCTTTCGTGCCGGTCTCCAACCCGCTCGACATTACCGCGCAGGGGCTTTCGGAGCCCGCGA TCTATACGCGCTGCATCGAAGCGCTGCTCGACGACGATCGCGTCGGTACGGTCTTTGCCGGCATCATCCAGGCCGAACCG ATCACTTGCAAGATCAAGTTCCCGCCGATCCTCGCTGCGGTTGAAGGCAGGACCCTGACCAAGCCAGTGATCTTCGCCGG GCTGGATGAGGGTGCCGAAGTCCCGGCCGAGCGCATTGCCGCCCTTCGTGCGGCGGGCATCCCCTGGTTCCCGACGACCG AACGCGCCCTGCGCGCCGTCACGCGCCTTACCCACTGGGCCGCGCAAGACCTTTCGGCCAACGATCTTCCGGCGACCCCG CTGCCCGGCCTCGCAGACGTCCACGGCGTGATCCCGGAGTACAGATCCAAGGAACTCCTGGGGCCCCTGGGCGTGAGCTT CCCCAAGGGTGGTTTTGCCGACAGCGCCGATGCGGCGGTCGCTGCTGCTGATACGGTCGGCTATCCGGTCGCCATGAAAG CGCAGGCGGCGGCGCTTGGCCACAAGAGCGATGCGGGCGGCGTACTCCTGAACCTGGTCGACGCGGCAGCCGTGCGCGAG GCATGGACGCGCATCCATGCCAATGTTGCGGCTTATTCCGCTGCCATCCGCCTTGATGGCGTCCTGATCGAGGCCATGGG CAAGCGCGGAATGGAAATGATCGTTGGCGCAAAGAACGATCCCGAGTGGGGGCCGGTCGTACTCGCAGGCTTCGGCGGGG TTACTGCCGAGATCCTGCAGGATGTCCGCCTGCTGACCGCAGACCTGACGCAGCAGGCGGTTGAAGCGGAACTGCTGAAG CTCAAGAGCGCGGCGTTGCTGAGCGGGTATCGTGGTTCCCCCGCGCTCGACGTGCCTGCACTTGCGGCGCTGATCGTCAA GGTCGGCCAGATCCTGCGCGCTGAACCTTCGATTCGCGAGATCGACCTCAATCCCGTGATCCTGCATCCCAAGGGCGAAG GCGTGGTTGCGCTCGACGCGTTGATGCTCGTGGATTGA
Upstream 100 bases:
>100_bases CTTTTGGTATGCTCGAACAGAAGGCTGTGCCTGCCTGACGTTCGGCCACTTGTCCTTCCTCCGATAATTGTTATAGCGCA TAGCGAAATCGGAGGATGCC
Downstream 100 bases:
>100_bases GGCTTGCGACGTTTAAAGACAGGAAGGGCGGTCCATCGGGCCGCCCTTTCGCGTTTCAGTGCCCTGGAAAGTCCATGAGC GCTTCGACGGTCAAACCAGC
Product: CoA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 705; Mature: 704
Protein sequence:
>705_residues MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVL AIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVP PAGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESG AFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEP ITCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVRE AWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLK LKSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD
Sequences:
>Translated_705_residues MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVL AIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVP PAGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESG AFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEP ITCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVRE AWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLK LKSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD >Mature_704_residues TGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVLA IPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPP AGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARRA KAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESGA FKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPI TCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATPL PGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVREA WTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKL KSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=723, Percent_Identity=26.9709543568465, Blast_Score=194, Evalue=1e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 73289; Mature: 73158
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIM CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHH GKRCYASVGALPEGVDVAVLAIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQ HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH REIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPPAGKRAIGIVSQSGAMAAVL HHHHHHHHHCCCEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCHHHHH GTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAE HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH IAVRCPALPSGKTAVLGESGAFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSN HHHHCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCC PLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPITCKIKFPPILAAVEGRTLT CCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCC KPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALG CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHEEHHHCCCCEEEHHHHHHCC HKSDAGGVLLNLVDAAAVREAWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKND CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCC PEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKLKSAALLSGYRGSPALDVPA CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD HHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEEEEEECCC >Mature Secondary Structure TGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIM CCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHH GKRCYASVGALPEGVDVAVLAIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQ HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH REIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPPAGKRAIGIVSQSGAMAAVL HHHHHHHHHCCCEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCHHHHH GTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAE HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH IAVRCPALPSGKTAVLGESGAFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSN HHHHCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCC PLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPITCKIKFPPILAAVEGRTLT CCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCC KPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALG CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHEEHHHCCCCEEEHHHHHHCC HKSDAGGVLLNLVDAAAVREAWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKND CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCC PEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKLKSAALLSGYRGSPALDVPA CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH LAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD HHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]