Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is yfiQ [C]

Identifier: 87198698

GI number: 87198698

Start: 709795

End: 711912

Strand: Direct

Name: yfiQ [C]

Synonym: Saro_0674

Alternate gene names: 87198698

Gene position: 709795-711912 (Clockwise)

Preceding gene: 87198697

Following gene: 87198705

Centisome position: 19.93

GC content: 66.19

Gene sequence:

>2118_bases
ATGACCGGAACGAGTCTTTCCCACGCCGCGCTCGATCGTTTCCTGCGCCCGAAGTCGGTCGCTGTCGTTGGTGCGTCGGA
CAAGCCGGGTGCGCTCGGGGCCACGCTGCTCACCAATCTCGACCGTAATGGCTATGCCGGCGCGGTCTATCCGGTGAACC
CCAAGCGCGACGAGATCATGGGCAAGCGCTGCTATGCCTCGGTCGGGGCGCTCCCCGAAGGCGTCGACGTCGCTGTCCTG
GCAATCCCGCGCGCAGGCGTGCTCGAGGCGGTCAAGGGCCTGGCTGATCGCAAGTGCGGCGGCGTGGTGATCTTCTCGGC
CGGGTTTGCCGAAGGCGGCGAGGAAGGACTTGCCGAACAGCGCGAGATCGCGCGTATCGCGCATGAAGCGGGCATGGTCG
TCGAAGGGCCGAACTGCCTTGGCCTCGTCAACTATGTCGATCGCATTCCCCTGACCTTCGTGGAAACCAATGCCGTGCCG
CCCGCTGGCAAGCGCGCCATCGGCATCGTCTCGCAGTCGGGCGCGATGGCGGCGGTGCTGGGCACGATGCTGCTCGCCCG
CGATGCTGGCGTGTCCTATTCGGTTTCGACCGGCAACGAGGCCGCCAGCGGCGTCGAGGACTATGTCGATTGGCTGGTGG
ATCAGGACGACACCCACGTGATCGCCATGATCGTGGAACAGTTCCGCAAGCCACAGGCGTTCCTTGCTGCCGCGCGCCGC
GCAAAGGCGGCGGGCAAGCCAGTCGTCCTGCTCCACCCCGGAAAATCCAGCGCCGCACGCGAATCCGCCGCGACTCATAC
GGGCGCAATGGCCGGCGACTACAAGCTCATGCGCGCCATGGTTGCGCGCGCGGGCGTGATCTTCGCCGAAACGCTGGAAG
AACTGGGTGACATTGCCGAGATCGCGGTGCGCTGCCCCGCGCTGCCTTCGGGCAAGACGGCGGTCCTGGGCGAATCGGGC
GCCTTCAAGGCGCTAACGCTCGACCTGGCCGAGGAGCTGGACCTGCCGCTGGCGGATCTCCACGATGACGATTCGCCGCT
GCTGCGCGCCGCACTCCCGCCTTTCGTGCCGGTCTCCAACCCGCTCGACATTACCGCGCAGGGGCTTTCGGAGCCCGCGA
TCTATACGCGCTGCATCGAAGCGCTGCTCGACGACGATCGCGTCGGTACGGTCTTTGCCGGCATCATCCAGGCCGAACCG
ATCACTTGCAAGATCAAGTTCCCGCCGATCCTCGCTGCGGTTGAAGGCAGGACCCTGACCAAGCCAGTGATCTTCGCCGG
GCTGGATGAGGGTGCCGAAGTCCCGGCCGAGCGCATTGCCGCCCTTCGTGCGGCGGGCATCCCCTGGTTCCCGACGACCG
AACGCGCCCTGCGCGCCGTCACGCGCCTTACCCACTGGGCCGCGCAAGACCTTTCGGCCAACGATCTTCCGGCGACCCCG
CTGCCCGGCCTCGCAGACGTCCACGGCGTGATCCCGGAGTACAGATCCAAGGAACTCCTGGGGCCCCTGGGCGTGAGCTT
CCCCAAGGGTGGTTTTGCCGACAGCGCCGATGCGGCGGTCGCTGCTGCTGATACGGTCGGCTATCCGGTCGCCATGAAAG
CGCAGGCGGCGGCGCTTGGCCACAAGAGCGATGCGGGCGGCGTACTCCTGAACCTGGTCGACGCGGCAGCCGTGCGCGAG
GCATGGACGCGCATCCATGCCAATGTTGCGGCTTATTCCGCTGCCATCCGCCTTGATGGCGTCCTGATCGAGGCCATGGG
CAAGCGCGGAATGGAAATGATCGTTGGCGCAAAGAACGATCCCGAGTGGGGGCCGGTCGTACTCGCAGGCTTCGGCGGGG
TTACTGCCGAGATCCTGCAGGATGTCCGCCTGCTGACCGCAGACCTGACGCAGCAGGCGGTTGAAGCGGAACTGCTGAAG
CTCAAGAGCGCGGCGTTGCTGAGCGGGTATCGTGGTTCCCCCGCGCTCGACGTGCCTGCACTTGCGGCGCTGATCGTCAA
GGTCGGCCAGATCCTGCGCGCTGAACCTTCGATTCGCGAGATCGACCTCAATCCCGTGATCCTGCATCCCAAGGGCGAAG
GCGTGGTTGCGCTCGACGCGTTGATGCTCGTGGATTGA

Upstream 100 bases:

>100_bases
CTTTTGGTATGCTCGAACAGAAGGCTGTGCCTGCCTGACGTTCGGCCACTTGTCCTTCCTCCGATAATTGTTATAGCGCA
TAGCGAAATCGGAGGATGCC

Downstream 100 bases:

>100_bases
GGCTTGCGACGTTTAAAGACAGGAAGGGCGGTCCATCGGGCCGCCCTTTCGCGTTTCAGTGCCCTGGAAAGTCCATGAGC
GCTTCGACGGTCAAACCAGC

Product: CoA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVL
AIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVP
PAGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR
AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESG
AFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEP
ITCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP
LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVRE
AWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLK
LKSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD

Sequences:

>Translated_705_residues
MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVL
AIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVP
PAGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR
AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESG
AFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEP
ITCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP
LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVRE
AWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLK
LKSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD
>Mature_704_residues
TGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIMGKRCYASVGALPEGVDVAVLA
IPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQREIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPP
AGKRAIGIVSQSGAMAAVLGTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARRA
KAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAEIAVRCPALPSGKTAVLGESGA
FKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSNPLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPI
TCKIKFPPILAAVEGRTLTKPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATPL
PGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALGHKSDAGGVLLNLVDAAAVREA
WTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKNDPEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKL
KSAALLSGYRGSPALDVPALAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD

Specific function: Unknown

COG id: COG1042

COG function: function code C; Acyl-CoA synthetase (NDP forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfiQ [H]

Homologues:

Organism=Escherichia coli, GI1788938, Length=723, Percent_Identity=26.9709543568465, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014089
- InterPro:   IPR013650
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR005809
- InterPro:   IPR016102 [H]

Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]

EC number: NA

Molecular weight: Translated: 73289; Mature: 73158

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50975 ATP_GRASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIM
CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHH
GKRCYASVGALPEGVDVAVLAIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQ
HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
REIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPPAGKRAIGIVSQSGAMAAVL
HHHHHHHHHCCCEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCHHHHH
GTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR
HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAE
HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IAVRCPALPSGKTAVLGESGAFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSN
HHHHCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCC
PLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPITCKIKFPPILAAVEGRTLT
CCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCC
KPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP
CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALG
CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHEEHHHCCCCEEEHHHHHHCC
HKSDAGGVLLNLVDAAAVREAWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKND
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCC
PEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKLKSAALLSGYRGSPALDVPA
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD
HHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEEEEEECCC
>Mature Secondary Structure 
TGTSLSHAALDRFLRPKSVAVVGASDKPGALGATLLTNLDRNGYAGAVYPVNPKRDEIM
CCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHH
GKRCYASVGALPEGVDVAVLAIPRAGVLEAVKGLADRKCGGVVIFSAGFAEGGEEGLAEQ
HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
REIARIAHEAGMVVEGPNCLGLVNYVDRIPLTFVETNAVPPAGKRAIGIVSQSGAMAAVL
HHHHHHHHHCCCEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCHHHHH
GTMLLARDAGVSYSVSTGNEAASGVEDYVDWLVDQDDTHVIAMIVEQFRKPQAFLAAARR
HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
AKAAGKPVVLLHPGKSSAARESAATHTGAMAGDYKLMRAMVARAGVIFAETLEELGDIAE
HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IAVRCPALPSGKTAVLGESGAFKALTLDLAEELDLPLADLHDDDSPLLRAALPPFVPVSN
HHHHCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCC
PLDITAQGLSEPAIYTRCIEALLDDDRVGTVFAGIIQAEPITCKIKFPPILAAVEGRTLT
CCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCC
KPVIFAGLDEGAEVPAERIAALRAAGIPWFPTTERALRAVTRLTHWAAQDLSANDLPATP
CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LPGLADVHGVIPEYRSKELLGPLGVSFPKGGFADSADAAVAAADTVGYPVAMKAQAAALG
CCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHEEHHHCCCCEEEHHHHHHCC
HKSDAGGVLLNLVDAAAVREAWTRIHANVAAYSAAIRLDGVLIEAMGKRGMEMIVGAKND
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCC
PEWGPVVLAGFGGVTAEILQDVRLLTADLTQQAVEAELLKLKSAALLSGYRGSPALDVPA
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LAALIVKVGQILRAEPSIREIDLNPVILHPKGEGVVALDALMLVD
HHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]