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The map label for this gene is abgR [H]

Identifier: 87198623

GI number: 87198623

Start: 644032

End: 644970

Strand: Direct

Name: abgR [H]

Synonym: Saro_0599

Alternate gene names: 87198623

Gene position: 644032-644970 (Clockwise)

Preceding gene: 87198622

Following gene: 87198624

Centisome position: 18.08

GC content: 66.99

Gene sequence:

>939_bases
ATGAGCGATCGCGCTCCGCTGATCGACAGGAAGTTTGCCAGCCGCGTCGACTGGAACCTGATGCGCACCTTCGTCGACAT
CGTTCGCGCAGGCGGGATCGGTGCGGCGGCGCGCCAGCTCAATCGCCAGCAGCCGAGCATCAGCGCGGCGCTCAAGCGGC
TCGAGGATCATGTCGGCGCGAGCCTGCTGGTCCGCACCGCGACCGGGGTCGAGATGACGCCGGCCGGCAAGGCGATGATG
GCGCTTTGCGAGGACATGCTGGAGACGGCGCGAATGGTGCCACACCAGATCGCCCAGGCGACGAGGCGCGTCGACGGGTT
CGTGCGCATCCAGATCGTCTCGGGCCTCGTCTCGGCCGAATTCGACGAGGCAATCGCCAGTTTCCACCGGCGCAATCCCG
CCATCCACATCGAGATCAGGGTGTCGCCCTGGCGCCAGGTGCTCGATGCGCTGGAGCAGGGGGAAGTGGAAATCGGCGTG
GGTTATGACGGCAGCGTGCGCGGAAGCCTGACCTACGAGCCGCTGCTGGTGGAGCGGCAACAGCTCTACTGCTCGCGATC
CAGCCCCTACTTCGGATATCGCGTGAGCCGGTTGCACGAGTTGAAGGACGAGGGCTTCGTCCTGACGGGCGACGACGAGA
TCGAACTGATCACCAACCTGCGCCGGCGCTACCGGCTGGGCTCCAACGTCGGTGGCATGGCAGAGGACATCAACGAGGCG
CGGCGGCTGATCAAGCTGGGCGTGGGCATCGGCTTCCTGCCTGTGCCCGCCGCCGAGGCGGAAGTGGCGAGAGGGACGCT
CTGGCCGATGCTTCACGCCGATTTCGAGCCTTCGTACGACGTCTATCTGCTGGCGCGGGCGGAGCCGGCGCGCGACACCG
CGACGCAGCTGTTCTGGGACGAGGTGTTCCGGCGGGTGAGGGCTTCGAGCCGGGCATAG

Upstream 100 bases:

>100_bases
TAGCCGGCGAGGGCATTTCGGCATCTTTTTCATCGATCCGATCTATGACCCGGCGCGCCGAGCGGGTATCTGAATCGTCC
GCACTTCAAGAGGGCATGGG

Downstream 100 bases:

>100_bases
ATCAGGTCTATGCCTTTCATGCAGTATTTGCGTCTGCCATAATGATGCGCCGCAGCGCAGGTTTTCGGTCACCGAACGGA
GCTGCGGCATGTCCACGAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSDRAPLIDRKFASRVDWNLMRTFVDIVRAGGIGAAARQLNRQQPSISAALKRLEDHVGASLLVRTATGVEMTPAGKAMM
ALCEDMLETARMVPHQIAQATRRVDGFVRIQIVSGLVSAEFDEAIASFHRRNPAIHIEIRVSPWRQVLDALEQGEVEIGV
GYDGSVRGSLTYEPLLVERQQLYCSRSSPYFGYRVSRLHELKDEGFVLTGDDEIELITNLRRRYRLGSNVGGMAEDINEA
RRLIKLGVGIGFLPVPAAEAEVARGTLWPMLHADFEPSYDVYLLARAEPARDTATQLFWDEVFRRVRASSRA

Sequences:

>Translated_312_residues
MSDRAPLIDRKFASRVDWNLMRTFVDIVRAGGIGAAARQLNRQQPSISAALKRLEDHVGASLLVRTATGVEMTPAGKAMM
ALCEDMLETARMVPHQIAQATRRVDGFVRIQIVSGLVSAEFDEAIASFHRRNPAIHIEIRVSPWRQVLDALEQGEVEIGV
GYDGSVRGSLTYEPLLVERQQLYCSRSSPYFGYRVSRLHELKDEGFVLTGDDEIELITNLRRRYRLGSNVGGMAEDINEA
RRLIKLGVGIGFLPVPAAEAEVARGTLWPMLHADFEPSYDVYLLARAEPARDTATQLFWDEVFRRVRASSRA
>Mature_311_residues
SDRAPLIDRKFASRVDWNLMRTFVDIVRAGGIGAAARQLNRQQPSISAALKRLEDHVGASLLVRTATGVEMTPAGKAMMA
LCEDMLETARMVPHQIAQATRRVDGFVRIQIVSGLVSAEFDEAIASFHRRNPAIHIEIRVSPWRQVLDALEQGEVEIGVG
YDGSVRGSLTYEPLLVERQQLYCSRSSPYFGYRVSRLHELKDEGFVLTGDDEIELITNLRRRYRLGSNVGGMAEDINEAR
RLIKLGVGIGFLPVPAAEAEVARGTLWPMLHADFEPSYDVYLLARAEPARDTATQLFWDEVFRRVRASSRA

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=184, Percent_Identity=28.2608695652174, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787879, Length=281, Percent_Identity=28.4697508896797, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789506, Length=213, Percent_Identity=25.8215962441315, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081904, Length=187, Percent_Identity=24.5989304812834, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=26.8421052631579, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=237, Percent_Identity=24.4725738396624, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=146, Percent_Identity=28.7671232876712, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34895; Mature: 34764

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRAPLIDRKFASRVDWNLMRTFVDIVRAGGIGAAARQLNRQQPSISAALKRLEDHVGA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCH
SLLVRTATGVEMTPAGKAMMALCEDMLETARMVPHQIAQATRRVDGFVRIQIVSGLVSAE
HEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
FDEAIASFHRRNPAIHIEIRVSPWRQVLDALEQGEVEIGVGYDGSVRGSLTYEPLLVERQ
HHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHH
QLYCSRSSPYFGYRVSRLHELKDEGFVLTGDDEIELITNLRRRYRLGSNVGGMAEDINEA
HHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RRLIKLGVGIGFLPVPAAEAEVARGTLWPMLHADFEPSYDVYLLARAEPARDTATQLFWD
HHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EVFRRVRASSRA
HHHHHHHHCCCC
>Mature Secondary Structure 
SDRAPLIDRKFASRVDWNLMRTFVDIVRAGGIGAAARQLNRQQPSISAALKRLEDHVGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCH
SLLVRTATGVEMTPAGKAMMALCEDMLETARMVPHQIAQATRRVDGFVRIQIVSGLVSAE
HEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
FDEAIASFHRRNPAIHIEIRVSPWRQVLDALEQGEVEIGVGYDGSVRGSLTYEPLLVERQ
HHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHH
QLYCSRSSPYFGYRVSRLHELKDEGFVLTGDDEIELITNLRRRYRLGSNVGGMAEDINEA
HHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RRLIKLGVGIGFLPVPAAEAEVARGTLWPMLHADFEPSYDVYLLARAEPARDTATQLFWD
HHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EVFRRVRASSRA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]