Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87198613

Identifier: 87198613

GI number: 87198613

Start: 634798

End: 635496

Strand: Direct

Name: 87198613

Synonym: Saro_0589

Alternate gene names: NA

Gene position: 634798-635496 (Clockwise)

Preceding gene: 87198612

Following gene: 87198616

Centisome position: 17.82

GC content: 63.81

Gene sequence:

>699_bases
ATGAAGTCTCTTTTGCAGAACAAGCGTCGTCGTCTTGTCGGCATGGTCGCGGTTCCGCTGATGCTGGCCGCGCTCGGCGG
CTGCGCATCGCCCTTCAATGCCAACGTGAAGCGTTTCCAGACCCAGCTTCCCGCGCCGCAGGGCCAGACCTTCGCGGTCG
TGGCCGAGGATCCCAAGGATGCCGGCGGTCTCGAGTTCTCGCAATACGCCTCGCTGGTCGCGGGGCAGATGCAGAAGCTC
GGCTACAGCCCGGCCAGCCCCGAGAGCGCCGACCTGATCGTGCGCTTCGACTATGGCGTGGACCAGGGCCGTGACCGCCT
GCGCGAGACGGGCTTCAACGATCCGTTCTGGGGGCCGTGGTACGGTCCCGGATACAACGGTTACTGGGGTCGCCCGGCAT
TCTACGGCCGTCGCGGCTGGGGCTATGGATGGTACGATCCGTTCTTCTGGGGCCCGGGCAACAGCGGGGTCGAGGTGACC
ACCGTCTACACCAGCGGGATCGACATGAAGATCGACCGCCGCGTCGATGGCCAGCGCCTGTTCGAGGGCAAGGCCGAGGC
GGCTTCTCAGTCGAACCGGCTGTCCTACCTGGTGCCGAACCTTGTCGAGGCGATGTTTACCGATTTCCCCGGGCACAACG
GTGAAACCGTAAGGATTTCAATCGCTCCCGAGAAGAAGACGGTCAAGAAGGTCAATTGA

Upstream 100 bases:

>100_bases
CAGCACCTCCCGTCCATAAGTACGGCATGCTAAGCACAGGTCGCGTCCGGTACGTTCATGGGAACGAGGTGCGGCGGACT
GCGCCCAAGGAGTCGCAAGG

Downstream 100 bases:

>100_bases
CCCGAACGGCACCTGAAAGCACCTGAACATACACGAAGGGGCCCGGCGGCGACGCGGGGCCCCTTTTTTCAGCCCTTGAG
AGCCGCGAGGCCGCCGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKSLLQNKRRRLVGMVAVPLMLAALGGCASPFNANVKRFQTQLPAPQGQTFAVVAEDPKDAGGLEFSQYASLVAGQMQKL
GYSPASPESADLIVRFDYGVDQGRDRLRETGFNDPFWGPWYGPGYNGYWGRPAFYGRRGWGYGWYDPFFWGPGNSGVEVT
TVYTSGIDMKIDRRVDGQRLFEGKAEAASQSNRLSYLVPNLVEAMFTDFPGHNGETVRISIAPEKKTVKKVN

Sequences:

>Translated_232_residues
MKSLLQNKRRRLVGMVAVPLMLAALGGCASPFNANVKRFQTQLPAPQGQTFAVVAEDPKDAGGLEFSQYASLVAGQMQKL
GYSPASPESADLIVRFDYGVDQGRDRLRETGFNDPFWGPWYGPGYNGYWGRPAFYGRRGWGYGWYDPFFWGPGNSGVEVT
TVYTSGIDMKIDRRVDGQRLFEGKAEAASQSNRLSYLVPNLVEAMFTDFPGHNGETVRISIAPEKKTVKKVN
>Mature_232_residues
MKSLLQNKRRRLVGMVAVPLMLAALGGCASPFNANVKRFQTQLPAPQGQTFAVVAEDPKDAGGLEFSQYASLVAGQMQKL
GYSPASPESADLIVRFDYGVDQGRDRLRETGFNDPFWGPWYGPGYNGYWGRPAFYGRRGWGYGWYDPFFWGPGNSGVEVT
TVYTSGIDMKIDRRVDGQRLFEGKAEAASQSNRLSYLVPNLVEAMFTDFPGHNGETVRISIAPEKKTVKKVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25707; Mature: 25707

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLQNKRRRLVGMVAVPLMLAALGGCASPFNANVKRFQTQLPAPQGQTFAVVAEDPKD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCC
AGGLEFSQYASLVAGQMQKLGYSPASPESADLIVRFDYGVDQGRDRLRETGFNDPFWGPW
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCC
YGPGYNGYWGRPAFYGRRGWGYGWYDPFFWGPGNSGVEVTTVYTSGIDMKIDRRVDGQRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCEEECCCCCCHHH
FEGKAEAASQSNRLSYLVPNLVEAMFTDFPGHNGETVRISIAPEKKTVKKVN
HCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCC
>Mature Secondary Structure
MKSLLQNKRRRLVGMVAVPLMLAALGGCASPFNANVKRFQTQLPAPQGQTFAVVAEDPKD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCC
AGGLEFSQYASLVAGQMQKLGYSPASPESADLIVRFDYGVDQGRDRLRETGFNDPFWGPW
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCC
YGPGYNGYWGRPAFYGRRGWGYGWYDPFFWGPGNSGVEVTTVYTSGIDMKIDRRVDGQRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCEEECCCCCCHHH
FEGKAEAASQSNRLSYLVPNLVEAMFTDFPGHNGETVRISIAPEKKTVKKVN
HCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA