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The map label for this gene is sodB [H]

Identifier: 87198508

GI number: 87198508

Start: 525874

End: 526488

Strand: Direct

Name: sodB [H]

Synonym: Saro_0483

Alternate gene names: 87198508

Gene position: 525874-526488 (Clockwise)

Preceding gene: 87198507

Following gene: 87198512

Centisome position: 14.77

GC content: 64.72

Gene sequence:

>615_bases
ATGGCCATTACCCTGCCTCCCCTGCCTTATGCCGACGACGCCCTGGCGCCGGCGATCTCCGCCACGACGCTGCAGACGCA
CCATGGCAAGCATCACAAGGCCTATGTCGACAAGACCAATGCGGCGATCGATGGGACGGATCTGGCCGGGGCCAGCCTCG
AGCAGATCATCGCGGCTGCCGATGCCAAGGGCGACAAGGGCCTGTTCAACAATGCGGCCCAGAGCTGGAACCACGCATTC
TACTGGAACAGCATGACCCCCGACGCGGCGACGCCAACGGGTGAGCTTGCCGCCGCGATCGACGCGGCATTCGGTTCGCT
GGACAAGCTGAAGGCCGAGCTGGCCGCGCAGGGCACCGCCCATTTCGCCTCGGGCTGGGTGTGGCTGGTGTCGCGCGGTG
GGAAGCTTGCGGTCGAACAGACGCACGATGCGGCGACCTTAGCCACGGGCGATGCGAAGCCCCTTCTCGTGATCGACCTG
TGGGAACACGCCTACTATCTCGATCACAAGAACCTGCGTCCGGACTACCTGAAGGCGGTGATCGAGAAGCACCTCAACTG
GACTTTCGCCGCCGAGAACCTGGCGCGCGAAGGAACCTGGACCTACCCGGCCTGA

Upstream 100 bases:

>100_bases
TTTCAACGCAAAATCAGTACGTAACGGCTCTATCTGGCGCAACCGGCGCGCGCCTTGCGCGTTGGTATGCGAACGAAGTT
GCACGAAGGACGCCAAGCCG

Downstream 100 bases:

>100_bases
GCTGCGCCGGCCGTTGAATTATCGGGCGGTCCGCCCTCGTCGGGATCATCATCCATCCCGGCGAGGCGGCCCGGCTCGAA
CAATGCCTCGCCGAACAGGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MAITLPPLPYADDALAPAISATTLQTHHGKHHKAYVDKTNAAIDGTDLAGASLEQIIAAADAKGDKGLFNNAAQSWNHAF
YWNSMTPDAATPTGELAAAIDAAFGSLDKLKAELAAQGTAHFASGWVWLVSRGGKLAVEQTHDAATLATGDAKPLLVIDL
WEHAYYLDHKNLRPDYLKAVIEKHLNWTFAAENLAREGTWTYPA

Sequences:

>Translated_204_residues
MAITLPPLPYADDALAPAISATTLQTHHGKHHKAYVDKTNAAIDGTDLAGASLEQIIAAADAKGDKGLFNNAAQSWNHAF
YWNSMTPDAATPTGELAAAIDAAFGSLDKLKAELAAQGTAHFASGWVWLVSRGGKLAVEQTHDAATLATGDAKPLLVIDL
WEHAYYLDHKNLRPDYLKAVIEKHLNWTFAAENLAREGTWTYPA
>Mature_203_residues
AITLPPLPYADDALAPAISATTLQTHHGKHHKAYVDKTNAAIDGTDLAGASLEQIIAAADAKGDKGLFNNAAQSWNHAFY
WNSMTPDAATPTGELAAAIDAAFGSLDKLKAELAAQGTAHFASGWVWLVSRGGKLAVEQTHDAATLATGDAKPLLVIDLW
EHAYYLDHKNLRPDYLKAVIEKHLNWTFAAENLAREGTWTYPA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=40.0990099009901, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=40.0990099009901, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI67782309, Length=194, Percent_Identity=37.1134020618557, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=51.2690355329949, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=40.4878048780488, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=37.7450980392157, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=37.3737373737374, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=36.9458128078818, Blast_Score=112, Evalue=3e-26,
Organism=Drosophila melanogaster, GI17136812, Length=183, Percent_Identity=37.7049180327869, Blast_Score=114, Evalue=4e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21900; Mature: 21768

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITLPPLPYADDALAPAISATTLQTHHGKHHKAYVDKTNAAIDGTDLAGASLEQIIAAA
CEEECCCCCCCCCHHHCHHHHHEECCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHH
DAKGDKGLFNNAAQSWNHAFYWNSMTPDAATPTGELAAAIDAAFGSLDKLKAELAAQGTA
CCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCH
HFASGWVWLVSRGGKLAVEQTHDAATLATGDAKPLLVIDLWEHAYYLDHKNLRPDYLKAV
HHHCCEEEEEECCCEEEEEECCCCEEEECCCCCCEEEEEECCCEEEECCCCCCHHHHHHH
IEKHLNWTFAAENLAREGTWTYPA
HHHHCCEEEEHHHHHCCCCCCCCC
>Mature Secondary Structure 
AITLPPLPYADDALAPAISATTLQTHHGKHHKAYVDKTNAAIDGTDLAGASLEQIIAAA
EEECCCCCCCCCHHHCHHHHHEECCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHH
DAKGDKGLFNNAAQSWNHAFYWNSMTPDAATPTGELAAAIDAAFGSLDKLKAELAAQGTA
CCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCH
HFASGWVWLVSRGGKLAVEQTHDAATLATGDAKPLLVIDLWEHAYYLDHKNLRPDYLKAV
HHHCCEEEEEECCCEEEEEECCCCEEEECCCCCCEEEEEECCCEEEECCCCCCHHHHHHH
IEKHLNWTFAAENLAREGTWTYPA
HHHHCCEEEEHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]