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The map label for this gene is cycM [H]

Identifier: 87198493

GI number: 87198493

Start: 511901

End: 512791

Strand: Direct

Name: cycM [H]

Synonym: Saro_0468

Alternate gene names: 87198493

Gene position: 511901-512791 (Clockwise)

Preceding gene: 87198485

Following gene: 87198495

Centisome position: 14.37

GC content: 65.99

Gene sequence:

>891_bases
ATGGACGACCGTTTCAACACCATCGCCGGATGGACCTTGTTCGGGGGCATCGTGGCTCTGGGGCTTTCCAGCCTCTCGGC
GCATTACTTCCTGGCCGACAAGGAACATCGCCCCGAAACGATGGGCTATGCGATCGAAGGCGTGGAAGAAGAAGGTGGCG
CCGGCGCCGCGGCCGAATTGCCGCTGCCGAATCTCCTTGCCAAGGCCGACGTGAAGGCCGGCGAAGCGCTGTTCGCCAAG
TGCAAGGCCTGCCACACGGCAGAGCAGGGCGGCGCGAACGGCATCGGCCCGAACCTCTACGGTGTGGTCGGTGAAGCGGT
TGCCGCAGGTCGCGGCGGCTTCGCGTTCTCGGACGCGCTGAAAGCCAAGGGCGGCAAGTGGGACTTCGAAAGCCTCGACG
CGTGGCTGAAGAACCCCAAGGCCTATGCTGACGGCACCAAGATGTCGTTCGCGGGTCTTCCCAAGGGCGAAGACCGCGCC
AACGTGATCGTCTACCTCAACTCGCTCGGCTCGAACCTGCCGCTGCCCGCGCCGGTCGAAGTGCCGGCTGCTGGCGCCGC
TCCCGCAGCCGTCGCCGTTGTCGGCGACGCCGCGAAGGGCGAGGCGATCTTTGCCAAGTGCAAGGCCTGCCACACCATCG
ACCAGGGTGGCGCGAACGGAATCGGCCCGAATCTCTTTGCCGTCTACGGCGAGAAGGTTGCTGGCGAACGTGGCGGCTTC
GCCTTCTCCGACGCGCTCAAGGGCAAGGGCGGTACCTGGGACGACGCGACGCTCGACGCGTGGCTGACCAGCCCGGCCAA
GTTCGCGCAGGGCACCAAGATGACCTTCGCGGGCATCGCCGACGCCCAGCAGCGCGCCGACGTGATCGCCTACATGAAGA
CGAAGAAGTAA

Upstream 100 bases:

>100_bases
GCTTCAAACCATCTTGCGCTGCGGCGGGGGCCTGACTAGAGCGTCCCGCAAATCGCGCAGGTGTCGGCAGGGTGCCGGCG
TGCGCCAATGGGGCTCGTAA

Downstream 100 bases:

>100_bases
GCTTCGCCTTCACTGCAATCCGAAAGGGCGTCCGGAGCGATCCGGGCGCCCTTTTCGCGTCAGGCCGCCGTTTCTTGCCG
CAAGTCGTAGGCACGCTGGG

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDDRFNTIAGWTLFGGIVALGLSSLSAHYFLADKEHRPETMGYAIEGVEEEGGAGAAAELPLPNLLAKADVKAGEALFAK
CKACHTAEQGGANGIGPNLYGVVGEAVAAGRGGFAFSDALKAKGGKWDFESLDAWLKNPKAYADGTKMSFAGLPKGEDRA
NVIVYLNSLGSNLPLPAPVEVPAAGAAPAAVAVVGDAAKGEAIFAKCKACHTIDQGGANGIGPNLFAVYGEKVAGERGGF
AFSDALKGKGGTWDDATLDAWLTSPAKFAQGTKMTFAGIADAQQRADVIAYMKTKK

Sequences:

>Translated_296_residues
MDDRFNTIAGWTLFGGIVALGLSSLSAHYFLADKEHRPETMGYAIEGVEEEGGAGAAAELPLPNLLAKADVKAGEALFAK
CKACHTAEQGGANGIGPNLYGVVGEAVAAGRGGFAFSDALKAKGGKWDFESLDAWLKNPKAYADGTKMSFAGLPKGEDRA
NVIVYLNSLGSNLPLPAPVEVPAAGAAPAAVAVVGDAAKGEAIFAKCKACHTIDQGGANGIGPNLFAVYGEKVAGERGGF
AFSDALKGKGGTWDDATLDAWLTSPAKFAQGTKMTFAGIADAQQRADVIAYMKTKK
>Mature_296_residues
MDDRFNTIAGWTLFGGIVALGLSSLSAHYFLADKEHRPETMGYAIEGVEEEGGAGAAAELPLPNLLAKADVKAGEALFAK
CKACHTAEQGGANGIGPNLYGVVGEAVAAGRGGFAFSDALKAKGGKWDFESLDAWLKNPKAYADGTKMSFAGLPKGEDRA
NVIVYLNSLGSNLPLPAPVEVPAAGAAPAAVAVVGDAAKGEAIFAKCKACHTIDQGGANGIGPNLFAVYGEKVAGERGGF
AFSDALKGKGGTWDDATLDAWLTSPAKFAQGTKMTFAGIADAQQRADVIAYMKTKK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=44.5544554455446, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17539604, Length=102, Percent_Identity=40.1960784313725, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=102, Percent_Identity=40.1960784313725, Blast_Score=76, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6320796, Length=96, Percent_Identity=45.8333333333333, Blast_Score=95, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=100, Percent_Identity=38, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17137228, Length=101, Percent_Identity=45.5445544554455, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=46.6019417475728, Blast_Score=95, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 30374; Mature: 30374

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRFNTIAGWTLFGGIVALGLSSLSAHYFLADKEHRPETMGYAIEGVEEEGGAGAAAEL
CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCEEEECCCCCCCCCCCCCC
PLPNLLAKADVKAGEALFAKCKACHTAEQGGANGIGPNLYGVVGEAVAAGRGGFAFSDAL
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
KAKGGKWDFESLDAWLKNPKAYADGTKMSFAGLPKGEDRANVIVYLNSLGSNLPLPAPVE
HCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC
VPAAGAAPAAVAVVGDAAKGEAIFAKCKACHTIDQGGANGIGPNLFAVYGEKVAGERGGF
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHCCCCCCE
AFSDALKGKGGTWDDATLDAWLTSPAKFAQGTKMTFAGIADAQQRADVIAYMKTKK
EEHHHHCCCCCCCCCCHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MDDRFNTIAGWTLFGGIVALGLSSLSAHYFLADKEHRPETMGYAIEGVEEEGGAGAAAEL
CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCEEEECCCCCCCCCCCCCC
PLPNLLAKADVKAGEALFAKCKACHTAEQGGANGIGPNLYGVVGEAVAAGRGGFAFSDAL
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
KAKGGKWDFESLDAWLKNPKAYADGTKMSFAGLPKGEDRANVIVYLNSLGSNLPLPAPVE
HCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC
VPAAGAAPAAVAVVGDAAKGEAIFAKCKACHTIDQGGANGIGPNLFAVYGEKVAGERGGF
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHCCCCCCE
AFSDALKGKGGTWDDATLDAWLTSPAKFAQGTKMTFAGIADAQQRADVIAYMKTKK
EEHHHHCCCCCCCCCCHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]