Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87198434

Identifier: 87198434

GI number: 87198434

Start: 448658

End: 449185

Strand: Direct

Name: 87198434

Synonym: Saro_0409

Alternate gene names: NA

Gene position: 448658-449185 (Clockwise)

Preceding gene: 87198433

Following gene: 87198437

Centisome position: 12.6

GC content: 67.61

Gene sequence:

>528_bases
ATGGCGCGGTTCGATGCCAGTGGAATGACCATCGTGGAAATGCGCGAGTTCGCCAGCTTTACCGCGGGCGAACAGCGCTA
CATCCGCCGCAGCCTCGACATCGCGCTCGAGCGCGGGGAGGCGATTGAACGCTGGGCTCGCAACGCCGAAGAGGCAGCCG
CCATCCGCCGCCAGACCATCATGTACCGCGATCTCGCCGATCTGCGAGGGATGCTTCCGCAAGTCGAGGACGTCGAGACG
CTCGATCCCTTCATGGGGCGGCTTGTGGCCCTGTCGGCCTTCGATCTCGCGCAGGAACGGCTCGACGGCTTTTCCGCCTA
CCGCTTCCTCTACGAACGGCTCCTCGGCGCTGAAGTGCGCCCCTGGCTACCTTCGGCCTTCTGCGGGGCCGCCGCGCTTC
CGGTGATCCGGCCCACGCGCCGCCGCGAGCTTCTCCAGTCGATCAGCGAAGCCGCAGCCACCGCGCACGGCTGGTCGATG
CGCGCGCCGCAGTTCTACCCCCAGTTCGTCGAGGCGGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
GCCTGACGGCTTGGCCGCGCCCAGCGCCAATCATCCGTTAACCAAGTTCTGCGAACACTTGCGCGTGGCGGGGGCGAATC
TCCCGCCGGAGGGCAAGATC

Downstream 100 bases:

>100_bases
GGCCCGTTCAGGGCACCAGCACGGTATCGCGCGCCACTTCGTTGGTCTGCGGATAGTCGAGCGTATAGTGCAGACCCCGG
CTCTCGTGCCGGGCGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MARFDASGMTIVEMREFASFTAGEQRYIRRSLDIALERGEAIERWARNAEEAAAIRRQTIMYRDLADLRGMLPQVEDVET
LDPFMGRLVALSAFDLAQERLDGFSAYRFLYERLLGAEVRPWLPSAFCGAAALPVIRPTRRRELLQSISEAAATAHGWSM
RAPQFYPQFVEAEAA

Sequences:

>Translated_175_residues
MARFDASGMTIVEMREFASFTAGEQRYIRRSLDIALERGEAIERWARNAEEAAAIRRQTIMYRDLADLRGMLPQVEDVET
LDPFMGRLVALSAFDLAQERLDGFSAYRFLYERLLGAEVRPWLPSAFCGAAALPVIRPTRRRELLQSISEAAATAHGWSM
RAPQFYPQFVEAEAA
>Mature_174_residues
ARFDASGMTIVEMREFASFTAGEQRYIRRSLDIALERGEAIERWARNAEEAAAIRRQTIMYRDLADLRGMLPQVEDVETL
DPFMGRLVALSAFDLAQERLDGFSAYRFLYERLLGAEVRPWLPSAFCGAAALPVIRPTRRRELLQSISEAAATAHGWSMR
APQFYPQFVEAEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19851; Mature: 19720

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFDASGMTIVEMREFASFTAGEQRYIRRSLDIALERGEAIERWARNAEEAAAIRRQTI
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH
MYRDLADLRGMLPQVEDVETLDPFMGRLVALSAFDLAQERLDGFSAYRFLYERLLGAEVR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PWLPSAFCGAAALPVIRPTRRRELLQSISEAAATAHGWSMRAPQFYPQFVEAEAA
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ARFDASGMTIVEMREFASFTAGEQRYIRRSLDIALERGEAIERWARNAEEAAAIRRQTI
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH
MYRDLADLRGMLPQVEDVETLDPFMGRLVALSAFDLAQERLDGFSAYRFLYERLLGAEVR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PWLPSAFCGAAALPVIRPTRRRELLQSISEAAATAHGWSMRAPQFYPQFVEAEAA
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA