Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198419
Identifier: 87198419
GI number: 87198419
Start: 431251
End: 431793
Strand: Direct
Name: 87198419
Synonym: Saro_0394
Alternate gene names: NA
Gene position: 431251-431793 (Clockwise)
Preceding gene: 87198418
Following gene: 87198420
Centisome position: 12.11
GC content: 63.35
Gene sequence:
>543_bases GTGCGGAAGTGGTTCAAGCGCATATCACCGGATCGTGAGGTTCTCCTCGCCAACCGCTGGTTGCGCCCCATCGCGCATCG GCTGAGCCATCCGGAAATCTGGCATTTCAATCGCCGGAACGTCGCGCGTGGTGTCGCGCTCGGGCTGTTCGTGGGCTTTG TTCTCCCACTGGGGCAGATCGTGGTGGCGGCGCTGCTCGCTGCGACGGCACGAGGCAATCTGCTGGTCGCGGCTGCGGCC ACCCTCGTTACCAATCCGCTGACCTTCCCGCCGATCTACTATGCTGCCTATCGTACAGGCTCATTCCTGATTGGGTCTGC GGGTGAGAGTCCTCAAGCGAACCGCGCTCACACTGGTGCGATGATGGAGGCGCTGACAAGCGCGTCGCTCCCGACCCTTG TCGGGCTCCTCCTGTTCGCGATTGTCTCTGCTGCTGCAGGCTTCGCGCTGGTCCATCTTGGCTGGCGCTTCTCATTGGCC CGGCAATGGCGTCGACGGATGCAGTCGGGCGCGGTGGACAGCTACCAGGACGGGAAGGATTGA
Upstream 100 bases:
>100_bases TATGCGGCGCGAACCGCTCGGTGGCTGTCGGCTGGGTTGCTTGATCCCTTCTTCAGCGGACAGCCATCGAGCTACCTCCT TTGTCGGCAGGTGGAGCTCC
Downstream 100 bases:
>100_bases TGGAGCCACATCCGGGAATCCCTTTTCTTCGAGAAGCGCTCGTTCTGCTTGCCGCTGCCGGGCTTGCGGTTCCGCTGCTG AACCGGATCCGGGTAAATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MRKWFKRISPDREVLLANRWLRPIAHRLSHPEIWHFNRRNVARGVALGLFVGFVLPLGQIVVAALLAATARGNLLVAAAA TLVTNPLTFPPIYYAAYRTGSFLIGSAGESPQANRAHTGAMMEALTSASLPTLVGLLLFAIVSAAAGFALVHLGWRFSLA RQWRRRMQSGAVDSYQDGKD
Sequences:
>Translated_180_residues MRKWFKRISPDREVLLANRWLRPIAHRLSHPEIWHFNRRNVARGVALGLFVGFVLPLGQIVVAALLAATARGNLLVAAAA TLVTNPLTFPPIYYAAYRTGSFLIGSAGESPQANRAHTGAMMEALTSASLPTLVGLLLFAIVSAAAGFALVHLGWRFSLA RQWRRRMQSGAVDSYQDGKD >Mature_180_residues MRKWFKRISPDREVLLANRWLRPIAHRLSHPEIWHFNRRNVARGVALGLFVGFVLPLGQIVVAALLAATARGNLLVAAAA TLVTNPLTFPPIYYAAYRTGSFLIGSAGESPQANRAHTGAMMEALTSASLPTLVGLLLFAIVSAAAGFALVHLGWRFSLA RQWRRRMQSGAVDSYQDGKD
Specific function: Unknown
COG id: COG3216
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19705; Mature: 19705
Theoretical pI: Translated: 12.02; Mature: 12.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKWFKRISPDREVLLANRWLRPIAHRLSHPEIWHFNRRNVARGVALGLFVGFVLPLGQI CCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH VVAALLAATARGNLLVAAAATLVTNPLTFPPIYYAAYRTGSFLIGSAGESPQANRAHTGA HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHH MMEALTSASLPTLVGLLLFAIVSAAAGFALVHLGWRFSLARQWRRRMQSGAVDSYQDGKD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRKWFKRISPDREVLLANRWLRPIAHRLSHPEIWHFNRRNVARGVALGLFVGFVLPLGQI CCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH VVAALLAATARGNLLVAAAATLVTNPLTFPPIYYAAYRTGSFLIGSAGESPQANRAHTGA HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHH MMEALTSASLPTLVGLLLFAIVSAAAGFALVHLGWRFSLARQWRRRMQSGAVDSYQDGKD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA