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The map label for this gene is cycH [H]

Identifier: 87198327

GI number: 87198327

Start: 327631

End: 328644

Strand: Direct

Name: cycH [H]

Synonym: Saro_0302

Alternate gene names: 87198327

Gene position: 327631-328644 (Clockwise)

Preceding gene: 87198322

Following gene: 87198328

Centisome position: 9.2

GC content: 67.36

Gene sequence:

>1014_bases
ATGACCGAGCCCCAGTCCAGTCCGGACCCGAAGCCCAATCCGGAAGCGAGCGCCGAGGCGCAGGGGGCTTCGCGCCTTGG
CCGCGCGGCGCTGATCGCCGCCGGCGTGATCGCGCTTGGGGCAGGCGGCTACGCCATGATCGGTCGACACGATTCGCCGC
CGCCTCCGGTCGAGCCGCCTCCCGCCGCTCCCAGCCAGCAGCCCTCGGTCGACGACGTGATCGCGAAGCTGGAAAAGAAG
CTGGCGGAAAATCCGGATGATGCCGAAGGCTGGCGCATGCTCGGCTGGTCCTATTTCCAGACCGAGCGCTATGCCGAGGC
GGCGACCGCACTGAAGAAGGCAACCAAGCTCGATCCCGAACATGCCGAGACCTGGTCGTTCCTGGGCGAGGCGCTGGTCC
TTGCCAGCAAGGAAGAAGGCCGCATGCCGCGCGATGCCAAGGCGGCATTCGACAAGGCGATCAAGCTCGATCCCAAGGAT
GCCCGCGCCCGCTACTTCCAGGCCGTCGCGCTAGACCTTTCGGGCCGGCACCGCCAGGCGATCAACGCCTGGTTCAAGCT
TCTCGAGGATACGCCCGCCGACGCACCCTATGCCGAGGACATCCGCGAGGTGATCCGCAACGTGGGCGAACGGCGCAAGA
TCGATGTCGAGAAGCGTCTCGCCGAAGCGCATTTCGCGGCGCCGGCCAACGGCGTGATCACCGATGGCCCGCACAAGGCG
GCGGCGGCCATCCCCGGTCCCACCAGCGCAGAGATGAAGGCGGCGGCCGGCCTGCCCAAGGGGCAGCAGGAAGCCATGAT
CCGCGGCATGGTCGACGGGCTCGAGGCAAAGCTCGAGAAGAATCCCGCCAATGTCGACGGCTGGATCATGCTCATGCGAA
GCCGCATGCAGCTTGGCGAGCCGCGCAAGGCTGCCGAATCGCTGCAGAAGGCCCTTGCCGCGTTCCGCAACGATGGCGCC
GCCTCCCGCAAATTGCGCGAAGCGGCATCCAGCATCGGCATTTCCGGCGCCTGA

Upstream 100 bases:

>100_bases
GGCGTCTCCGCATTGTCCTTCAACGGCTTGCAAGCTGCTGGCAGGGCGCGATATGCGGCGCCATTGACGGATGCGGTCTC
GTGTCCGACAGGAGTTTGCG

Downstream 100 bases:

>100_bases
TTCGGCAACCTCGGTATTTTTCCACAGGCCGATCGCGTCTCGACCGTTAACCAAGCCGGGCGGGTTTCATGTGTGCCGGG
CAGTGCATGATTCATTTCGG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTEPQSSPDPKPNPEASAEAQGASRLGRAALIAAGVIALGAGGYAMIGRHDSPPPPVEPPPAAPSQQPSVDDVIAKLEKK
LAENPDDAEGWRMLGWSYFQTERYAEAATALKKATKLDPEHAETWSFLGEALVLASKEEGRMPRDAKAAFDKAIKLDPKD
ARARYFQAVALDLSGRHRQAINAWFKLLEDTPADAPYAEDIREVIRNVGERRKIDVEKRLAEAHFAAPANGVITDGPHKA
AAAIPGPTSAEMKAAAGLPKGQQEAMIRGMVDGLEAKLEKNPANVDGWIMLMRSRMQLGEPRKAAESLQKALAAFRNDGA
ASRKLREAASSIGISGA

Sequences:

>Translated_337_residues
MTEPQSSPDPKPNPEASAEAQGASRLGRAALIAAGVIALGAGGYAMIGRHDSPPPPVEPPPAAPSQQPSVDDVIAKLEKK
LAENPDDAEGWRMLGWSYFQTERYAEAATALKKATKLDPEHAETWSFLGEALVLASKEEGRMPRDAKAAFDKAIKLDPKD
ARARYFQAVALDLSGRHRQAINAWFKLLEDTPADAPYAEDIREVIRNVGERRKIDVEKRLAEAHFAAPANGVITDGPHKA
AAAIPGPTSAEMKAAAGLPKGQQEAMIRGMVDGLEAKLEKNPANVDGWIMLMRSRMQLGEPRKAAESLQKALAAFRNDGA
ASRKLREAASSIGISGA
>Mature_336_residues
TEPQSSPDPKPNPEASAEAQGASRLGRAALIAAGVIALGAGGYAMIGRHDSPPPPVEPPPAAPSQQPSVDDVIAKLEKKL
AENPDDAEGWRMLGWSYFQTERYAEAATALKKATKLDPEHAETWSFLGEALVLASKEEGRMPRDAKAAFDKAIKLDPKDA
RARYFQAVALDLSGRHRQAINAWFKLLEDTPADAPYAEDIREVIRNVGERRKIDVEKRLAEAHFAAPANGVITDGPHKAA
AAIPGPTSAEMKAAAGLPKGQQEAMIRGMVDGLEAKLEKNPANVDGWIMLMRSRMQLGEPRKAAESLQKALAAFRNDGAA
SRKLREAASSIGISGA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36062; Mature: 35931

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPQSSPDPKPNPEASAEAQGASRLGRAALIAAGVIALGAGGYAMIGRHDSPPPPVEPP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
PAAPSQQPSVDDVIAKLEKKLAENPDDAEGWRMLGWSYFQTERYAEAATALKKATKLDPE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HAETWSFLGEALVLASKEEGRMPRDAKAAFDKAIKLDPKDARARYFQAVALDLSGRHRQA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH
INAWFKLLEDTPADAPYAEDIREVIRNVGERRKIDVEKRLAEAHFAAPANGVITDGPHKA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
AAAIPGPTSAEMKAAAGLPKGQQEAMIRGMVDGLEAKLEKNPANVDGWIMLMRSRMQLGE
HCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
PRKAAESLQKALAAFRNDGAASRKLREAASSIGISGA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TEPQSSPDPKPNPEASAEAQGASRLGRAALIAAGVIALGAGGYAMIGRHDSPPPPVEPP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
PAAPSQQPSVDDVIAKLEKKLAENPDDAEGWRMLGWSYFQTERYAEAATALKKATKLDPE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HAETWSFLGEALVLASKEEGRMPRDAKAAFDKAIKLDPKDARARYFQAVALDLSGRHRQA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH
INAWFKLLEDTPADAPYAEDIREVIRNVGERRKIDVEKRLAEAHFAAPANGVITDGPHKA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCH
AAAIPGPTSAEMKAAAGLPKGQQEAMIRGMVDGLEAKLEKNPANVDGWIMLMRSRMQLGE
HCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
PRKAAESLQKALAAFRNDGAASRKLREAASSIGISGA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]