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The map label for this gene is qseB [H]

Identifier: 86751792

GI number: 86751792

Start: 5313976

End: 5314641

Strand: Reverse

Name: qseB [H]

Synonym: RPB_4694

Alternate gene names: 86751792

Gene position: 5314641-5313976 (Counterclockwise)

Preceding gene: 86751793

Following gene: 86751791

Centisome position: 99.68

GC content: 69.22

Gene sequence:

>666_bases
ATGCGGGTGCTGGTGGCCGAGGACGACAGCCGGATCGCGGCGGATCTCGCGCGCGGGCTCACCGAAGCCGGCTACATCGC
CGAATGCGTCGCCGACGGCGAGGAGGCTTGGTTTCGCGGCGATACCGAGGACTACGCCGCGATCATTCTCGATCTCGGCC
TGCCGCGGCTCGACGGGCTGACCATCCTCAAGCGCTGGCGCGAAGCCGGCCGCCGCACGCCGGTGCTGATCCTGACCGCG
CGCGGCAGCTGGGCCGAGCGGGTCGACGGCATCGACGCCGGCGCCGACGATTATCTGCCGAAGCCGTTCCAGATGGAGGA
GCTGCTGGCGCGGCTGCGCTCGATCGTGCGCCGCTCCGCCGGCCACGCGTCTTCGGTGGTCTGCATCGGTGACCTCACCC
TCGACGAGCGCCAGATGCAGGTCAGCCTGCGCGGCCAGAAGGTGGCGCTGTCGCCGCTGGAATATCGGCTGGCGTCGTAT
CTGGTGCTGCATCGCGGCCGGGTGGTGTCGCAGTTCGAGCTCAACGAGAACATCTACGGCCAGGACGACGCGCATGATTC
CAACGCCATCGAGGTGCTGGTCGGCCGTGTCCGCAAGAAGCTCGGCCCCGAGCTGATCGAGACCAGGCGCGGCTTCGGCT
ACATCGTGCCCGGGGACGGCACGTGA

Upstream 100 bases:

>100_bases
CTGTACGAATTCATCGTGGTCGACAAGAATGGGCGGCTGTTCGAGGTCTATGTCGATCCGCAGAGCGGCGAGATCCGGAA
GACCAGGGAAAAATAGACCG

Downstream 100 bases:

>100_bases
CGCGACATTCGCTGCGGCTGCGGCTGATCGCCGGCGGCGCCGCGGCGATCCTGGTCGCGCTCAGCATCGCCGGCATCGCG
CTCATCATCCTGTTCGAGCG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGLTILKRWREAGRRTPVLILTA
RGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASY
LVLHRGRVVSQFELNENIYGQDDAHDSNAIEVLVGRVRKKLGPELIETRRGFGYIVPGDGT

Sequences:

>Translated_221_residues
MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGLTILKRWREAGRRTPVLILTA
RGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASY
LVLHRGRVVSQFELNENIYGQDDAHDSNAIEVLVGRVRKKLGPELIETRRGFGYIVPGDGT
>Mature_221_residues
MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGLTILKRWREAGRRTPVLILTA
RGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASY
LVLHRGRVVSQFELNENIYGQDDAHDSNAIEVLVGRVRKKLGPELIETRRGFGYIVPGDGT

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=42.1296296296296, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1790552, Length=219, Percent_Identity=38.8127853881278, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=36.986301369863, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=36.6515837104072, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=39.2694063926941, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=31.8965517241379, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=30.9090909090909, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=32.8828828828829, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=32.4444444444444, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=30.0448430493274, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=24.8888888888889, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=26.1802575107296, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=28.9719626168224, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24506; Mature: 24506

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL
CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCHHHHHHHEECCCCCCCHH
TILKRWREAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA
HHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYG
CCCCCEEEEECCCCCCHHHEEEECCCEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
QDDAHDSNAIEVLVGRVRKKLGPELIETRRGFGYIVPGDGT
CCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEEECCCCC
>Mature Secondary Structure
MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL
CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCHHHHHHHEECCCCCCCHH
TILKRWREAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA
HHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYG
CCCCCEEEEECCCCCCHHHEEEECCCEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
QDDAHDSNAIEVLVGRVRKKLGPELIETRRGFGYIVPGDGT
CCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]