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The map label for this gene is lhr [C]

Identifier: 86751711

GI number: 86751711

Start: 5210782

End: 5213595

Strand: Reverse

Name: lhr [C]

Synonym: RPB_4613

Alternate gene names: 86751711

Gene position: 5213595-5210782 (Counterclockwise)

Preceding gene: 86751712

Following gene: 86751710

Centisome position: 97.79

GC content: 68.27

Gene sequence:

>2814_bases
GTGACCATCGCCGATTCCGACGCTCCCCTCGATCTGCTGCCCGACCGCTTTCGGCACTGGTTCGCCGCACGCGGCTGGAC
GCCGCGCGCGCACCAGCTAGCGTTGCTGCGACAGGCGCGCGCGCAACGCTCGGCGCTGCTGATCGCCCCGACCGGCGCCG
GCAAGACACTGGCGGGCTTTTTGCCGACGCTGGTGGAGTTGAGCGAGGCGGCGCCTAACCTCTCCCCGATTGCGGGGAGA
GGTCGACTAGCTGGCGTAGCCGGCAAGTCGGGTGAGGGGGCTGATGAGTTGCCCATTGCCGGGGCAGCTGTGTGCGCCGA
GGCGCCCCCTCACCCGGCGCGCCGAGCTGCGCTTGCCGCGCCACCCTCTCCCCGCGCGCGGGGAGAGGGTTCGAGCCGCG
GTCTCCATACACTGTATATTTCGCCGCTGAAGGCGCTGGCGGTCGACATCGCCCGCAATCTCGAAGCGCCGATCGCGCAG
ATGAATCTGCCGATCCGGGTCGAGACCCGCACCGGCGACACGCCGGTGTCGCGACGCGCGAGGCAACGCAAATATCCGCC
GGACATTCTGCTGACCACGCCGGAACAGCTCGCGCTGCTGCTGGCGTCCGACGATGCGCCCTATCTGTTCGGTTCCCTGC
AGCGCATCGTGCTCGACGAGCTGCACGCGCTGGTGACCTCGAAGCGCGGCGATCTGCTGTCGCTGGGGCTGGCGCGGCTT
TGGCGGATCGCGCCGCAGCTTCGCGCCACCGGGCTATCGGCGACGGTCGCCGATCCCGATGAGCTCGCGCGCTTCCTGGT
GCCGCAGCCGTTCGTTCCCTCTCCCCTTGTGGGAGAGGGTGGCGCCGAACGCAGTGAGGCGACGGGTGAGGGGGCGAGCG
CGGGCGCCGAGCCCGCAGCCTACCCCTCACCCCGGCCCTCTCCCACAAGGGGAGAGGGAGAACAGGCCGACATCGTCGTC
GCCCGCGGCGCGGCGCAGCCGATCGTCGAGATGCTCGACACCAAGGAGCGGCTGCCCTGGGCCGGGCATTCGGCGCGCCA
TGCGCTGGCCGAGATCTACGACCTGATCCGGCGCAACACCACCACGCTGGTGTTCGTCAACACCCGCAGCCAGGCGGAGA
TGCTGTTCCAGGAACTCTGGCGCATGAACGACGACAATCTGGCGATCGCGCTGCATCACGGTTCGCTCGACGTCGCGCAG
CGCCGCAAGGTCGAGGACGCGATGGCGGCGGGGCGGCTGCGTGGCGTGGTGTGCACCTCTTCGCTCGATCTCGGCATCGA
CTGGGGCGACATCGACCTGGTCGTCAATGTCGGCGCGCCGAAAGGCTCGTCGCGGCTGATGCAGCGGATCGGCCGCGCCA
ATCACCGGCTCGACGAGGCGTCGCGCGCGGTGCTGGTGCCGGCCAATCGCTTCGAAGTGCTGGAATGCGCTGCCGCAATC
GATGCGGTCGCCGAAAACGCGCAGGACACCCCGCCGCAACGCACCGGCGCGCTCGACGTGCTGGCGCAGCACATCCTCGG
CTGCGCCTGCGGCGAGCCGTTCGTCGCAGATGAATTGTACAAGGAAGTGCGGAGTGCGGCACCTTACGCCGATCTCAGCC
GGGCTGATTTCGACGATACGCTCGATTTCGTCGCCACCGGCGGCTACGCGCTGAAGAGCTATGAGCGCTTCGCGCGCATC
AGGCAGGACAAGCAGGGCAAGTGGCGCGTCGCCAATCCGAAGGTGCGGCAGGCTTATCGCCTGAATGTCGGCACCATCGT
CGAGGAGGCGATGCTGAAGGTGAAGCTGGTGCGCTCGGCGAAGTCCAAAGGCGGCGGCCATACCGGCGCGATCGCGCGCG
GCGGCCGGATGCTCGGCCAGATCGAGGAGTACTTCATCGAGGGCCTGACGCCGGGCGACACCTTCGTGTTCGGCGGCGAG
GTGGTGCGCTACGAGGCGCTGATGGAGGATCAGGTCTACGTCTCCCGCGCGCACGACAAGGATGCGCGGGTGCCGTCCTA
TATGGGCGGCAAGTTCCCGCTCTCGACCTATCTGGCCGAACGCGTCCGCGGGTTGCTCGCCGACAAGCAGGCGTGGAAGG
GGCTTCCTGATCAAGTGCGTGACTGGCTCGCGCTGCAGAGCAAGGCGTCGCGCGTGCCGGGCCGCAGCGAGCTCGTGGTC
GAAACCTTTCCGCGCGCCGCCAAATACTACCTGGTCTGCTACCCGTTCGAAGGACGGCTGGCGCATCAGACGCTCGGCAT
GCTGCTGACGCGGCGGCTGGAGCGTGCCCGCGCCCGGCCGCTCGGCTTCGTCGCCAACGAATATGCGCTCGCAGTGTGGG
GGCTCGGCGATACGTCTCACATGATCCGGCAGGGGCGGCTCGATCTCGACGCGCTGTTCGATCCGGATATGCTCGGCGAC
GATCTCGAAGCCTGGCTCGCCGAATCGGCGCTGATGAAACGCACCTTCCGTTACGCGGCGATCATCTCCGGGCTGATCGC
GCGGCGCTTCGCCGGCGAGGAAAAATCGCGGCGCCAGGTGCTGTTCTCGACTGACCTGGTCTACGACGTGCTCAACAAGC
ACCAGCCCGACCACGTGCTGTTGCGCGCCGCGCGCGCCGACGCCGCCACGGGGCTGCTCGATTTACGGCGCCTCAGTGAT
ATGCTGACGCGAATCAAGGGGCGCATCGTCCACAAGGAACTCGATCGCGTGTCGCCGCTGGCGGTGCCGGTGATGCTGGA
AATCGGCCGCGAAGCCGTGTACGGCGAGGCTTCCGACGAACTGCTCGCCGACGCGGCCGACGAACTGGTGCGCGAGGCGA
CCGAGCGTCGCTAG

Upstream 100 bases:

>100_bases
ACGCCCGCCTTCGGCGGGCGTTTTGCGTTTCCGGATCGCATGGCCGGCGGAGCCGCGCGACGATCTCGATTTTGACGCGA
CGAATGCCTAGCTTGGCGAT

Downstream 100 bases:

>100_bases
AAGAACTGGATGTTCCGCATCCGCTCCGTCATGCCCGGGCTTGTCCCGGGCATCCACGACCACTGCTTCCCCCCGTGTCC
ATCGTGATGGCCGGGACGAG

Product: DEAD/DEAH box helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 937; Mature: 936

Protein sequence:

>937_residues
MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGR
GRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQ
MNLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL
WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVV
ARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQ
RRKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI
DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARI
RQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGE
VVRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV
ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGD
DLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSD
MLTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR

Sequences:

>Translated_937_residues
MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGR
GRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQ
MNLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL
WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVV
ARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQ
RRKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI
DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARI
RQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGE
VVRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV
ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGD
DLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSD
MLTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR
>Mature_936_residues
TIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGRG
RLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQM
NLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARLW
RIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVVA
RGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQR
RKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAID
AVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARIR
QDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEV
VRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVVE
TFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGDD
LEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDM
LTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=1000, Percent_Identity=27.5, Blast_Score=239, Evalue=8e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 102322; Mature: 102191

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGF
CCCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH
LPTLVELSEAAPNLSPIAGRGRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAA
HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC
PPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQMNLPIRVETRTGDTPVSRRA
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHH
RQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL
HHCCCCCCEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAA
HHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YPSPRPSPTRGEGEQADIVVARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNT
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
TTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQRRKVEDAMAAGRLRGVVCTS
CEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEC
SLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH
DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDT
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH
LDFVATGGYALKSYERFARIRQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSA
HHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEVVRYEALMEDQVYVSRAHDK
HHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC
DARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHH
ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSH
HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHH
MIRQGRLDLDALFDPDMLGDDLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQV
HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
LFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDMLTRIKGRIVHKELDRVSPL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AVPVMLEIGREAVYGEASDELLADAADELVREATERR
HHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGF
CCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH
LPTLVELSEAAPNLSPIAGRGRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAA
HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC
PPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQMNLPIRVETRTGDTPVSRRA
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHH
RQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL
HHCCCCCCEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAA
HHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YPSPRPSPTRGEGEQADIVVARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNT
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
TTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQRRKVEDAMAAGRLRGVVCTS
CEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEC
SLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH
DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDT
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH
LDFVATGGYALKSYERFARIRQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSA
HHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEVVRYEALMEDQVYVSRAHDK
HHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC
DARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHH
ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSH
HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHH
MIRQGRLDLDALFDPDMLGDDLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQV
HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
LFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDMLTRIKGRIVHKELDRVSPL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AVPVMLEIGREAVYGEASDELLADAADELVREATERR
HHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]