Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 86751616

GI number: 86751616

Start: 5105694

End: 5106587

Strand: Reverse

Name: ywbI [H]

Synonym: RPB_4518

Alternate gene names: 86751616

Gene position: 5106587-5105694 (Counterclockwise)

Preceding gene: 86751618

Following gene: 86751613

Centisome position: 95.78

GC content: 72.26

Gene sequence:

>894_bases
ATGCGGTTCGACCTGGTCGACCTTCAGTTGTTCGTCGCGGTCGTGGAGGCGCGCAGCATCACGGGCGGCGCGGCGCGGGC
GCATCTGGCGCTGGCCTCGGCGAGCGCTCGGATCCGCGGGCTGGAGCAGGCGCTCGGTGTGACGCTGCTGCGCCGCGGCC
GCCGCGGCGTGGCGCCGACGGCGGCGGGTGAGAGCCTGTTCGGCCACGCCCGGGTGGTGCTGCAGGACGTCGAGGTGATG
CGCGGCGATCTGGCCGCCCATGCGCGGGGCCTGAAGGCCAGCGTCCATCTGCTCGCCAACACCGCCAGCCTTTCGGAGCA
TCTGCCGAAGACGCTGGCTGAATTTCTGGCTGCGCATCCCGATTTCAACGTCGAGGTCGAGGAACGCGAAAGCGCCGAGA
TCGTCGCGGCGATCGCGGCCGGCGCCGCGGAAGTCGGCATCGCGGTCGACACCGCGGTGCCGGACACGCTGGAGCGCTTT
GCGTTCTGCGACGATCGCCTGGTGCTGGTGCTGCCGCCGCACGATCCGCTGGCGCAGCGCCGCGGCATCCGTTTGGCCGA
GGTGCTGCAGCGGGATTTCGTCGGGCTTTCCGGGCCGAACGCATTGCACGCGCACGTCGCCGCGCAGGCGGCGCGGCTCG
GCGCGCGGCTGCGGTTTCGCGCCCGATTGCGGGATTTCGCCGGCCTGTGCCAGCTGGTCGAGGCCGGGGTCGGCGTTGCG
GTGATGCCGGAGACCGCGGTCAGAGCCAACGCCAGAACCATGCGGATTCGGGCGGTGCGGCTGCTGGACGAATGGGCCAG
CCGCAAGCTGGTGATCTGCGCCCGCAGCCTGAAGGCGCTGCCACGGCCGGCGCAGCAGCTGGTCGCGCATCTGCGCCGCT
CGGCGCCGCCCTGA

Upstream 100 bases:

>100_bases
GCGGATCGGGCATCGCGGTACATTGACGCAATGGGTAGCCGGGCACAATGTGGAGGCTCCAGAGTCAGCCTTCGCTATAT
CCGAAGGCAGCGGGGACGCC

Downstream 100 bases:

>100_bases
CCGCCGGTGCTCAGCCGTTGAGGATCTTCATCGCGGCCTCGTGGACGCGCTTGTCGCCGGCGGCGACGATGCGGCCGCCG
TTCTGCGCCGGCTGGCCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLLRRGRRGVAPTAAGESLFGHARVVLQDVEVM
RGDLAAHARGLKASVHLLANTASLSEHLPKTLAEFLAAHPDFNVEVEERESAEIVAAIAAGAAEVGIAVDTAVPDTLERF
AFCDDRLVLVLPPHDPLAQRRGIRLAEVLQRDFVGLSGPNALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVA
VMPETAVRANARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP

Sequences:

>Translated_297_residues
MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLLRRGRRGVAPTAAGESLFGHARVVLQDVEVM
RGDLAAHARGLKASVHLLANTASLSEHLPKTLAEFLAAHPDFNVEVEERESAEIVAAIAAGAAEVGIAVDTAVPDTLERF
AFCDDRLVLVLPPHDPLAQRRGIRLAEVLQRDFVGLSGPNALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVA
VMPETAVRANARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP
>Mature_297_residues
MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLLRRGRRGVAPTAAGESLFGHARVVLQDVEVM
RGDLAAHARGLKASVHLLANTASLSEHLPKTLAEFLAAHPDFNVEVEERESAEIVAAIAAGAAEVGIAVDTAVPDTLERF
AFCDDRLVLVLPPHDPLAQRRGIRLAEVLQRDFVGLSGPNALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVA
VMPETAVRANARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693105, Length=250, Percent_Identity=22.4, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=285, Percent_Identity=24.5614035087719, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=270, Percent_Identity=28.1481481481481, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=23.6734693877551, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789204, Length=256, Percent_Identity=24.609375, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=256, Percent_Identity=26.171875, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787806, Length=264, Percent_Identity=23.8636363636364, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI157672245, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=27.0161290322581, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31849; Mature: 31849

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLLRRGRRGVAPT
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
AAGESLFGHARVVLQDVEVMRGDLAAHARGLKASVHLLANTASLSEHLPKTLAEFLAAHP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFNVEVEERESAEIVAAIAAGAAEVGIAVDTAVPDTLERFAFCDDRLVLVLPPHDPLAQR
CCCEEECCCCCHHHHHHHHHCHHHHCEEEECCCHHHHHHHHHCCCCEEEEECCCCHHHHH
RGIRLAEVLQRDFVGLSGPNALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VMPETAVRANARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP
ECCCHHHHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLLRRGRRGVAPT
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
AAGESLFGHARVVLQDVEVMRGDLAAHARGLKASVHLLANTASLSEHLPKTLAEFLAAHP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFNVEVEERESAEIVAAIAAGAAEVGIAVDTAVPDTLERFAFCDDRLVLVLPPHDPLAQR
CCCEEECCCCCHHHHHHHHHCHHHHCEEEECCCHHHHHHHHHCCCCEEEEECCCCHHHHH
RGIRLAEVLQRDFVGLSGPNALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VMPETAVRANARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP
ECCCHHHHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]