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The map label for this gene is yhbU [H]

Identifier: 86751574

GI number: 86751574

Start: 5066110

End: 5067087

Strand: Reverse

Name: yhbU [H]

Synonym: RPB_4476

Alternate gene names: 86751574

Gene position: 5067087-5066110 (Counterclockwise)

Preceding gene: 86751575

Following gene: 86751573

Centisome position: 95.04

GC content: 67.28

Gene sequence:

>978_bases
ATGGAACTGATCTGTCCGGCGGGCACGCCCGCGGCGCTGCACGATGCCGTCGCGGTGGGGGCCGATGCGATCTATTGCGG
CTTCAACGACGAGACCAATGCGCGCAATTTCCCGGGGCTGAATTTCAGCCGCGAGGAAATGCGCGAGTCGATCGCGCACG
CGCATCGCTACGGCGTCAACGTGCTGGTGGCGATTAACACCTTCGCCCGCGCCGGCAATGTCGAGCTGTGGCAGCGCGCG
GTCGACGACGCGGTCGAGGCCGAAGCCGATGCGGTGATCCTCGCCGATGTCGGCGTGATGGATTATTGCGCCAGGACCCA
TCCGCAGCAGCGCCTGCACGTCTCGGTGCAGGCCGCCGCGGCGAACGCGGATTCGATCCGGTTCTATGTCGACAGCTTCA
ACGCCAAGCGCGTGGTGCTGCCGCGCGTGCTCAGCGTGCAGGAGATCGCCGCGATCACGCGCGAGGTCAAGTGCGAGACC
GAAGTGTTCATCTTCGGCGGGCTGTGCGTGATGGAGGAGGGTCGCTGCTCGCTGTCGTCCTACGCCACCGGCAAATCGCC
GAACATGGACGGGGTCTGCTCGCCGGCGGGCGCGATCCAGTATCGCGAGGAGAACGGCGCGCTGATCTCGCGGCTCGGCG
ATTTCACCATCAACAAATTCGCCAAGGGCGAGGCGGCGGCCTATCCGACGCTGTGCAAGGGGCGCTACCAGACCGACGAG
GGCTGCGGCTATCTGTTCGAGGACCCGGCTTCGCTCGACGCCACCACGATGCTGCCGGAGCTGCGCGCCGCCGGCGTCGC
GGCGCTGAAGATCGAGGGCCGCCAGCGCGGCCGCGCCTATATCGAGCGCGTGGTGAAGACCTTCAAGGAGGTGCTGAGCG
CGCTGGACGACGGAAGGCCGTTGCCGGTCGACGCGCTGCGCGGGCTCAGCGAGGGCCAGTCCAACACCACCGGCGCCTAC
AAGAAGACCTGGCGCTGA

Upstream 100 bases:

>100_bases
CGGCCCGCTGGCGACGCCGATCGAGCGGATTCTGCGGAGCATCGTCGGCGCGCAGCCGACCTATCGCGAAGAAATGGGCG
TCGGAGGCGGAGGCTAGAGC

Downstream 100 bases:

>100_bases
GCCACGCGTCGCCGCAGACCTGCAGCGCGACAACAAGGCGCGCAAACGCAGCACCGCCAACTCACAACGAGGCTATTCCC
ATGCAACTCACGCTCGGACC

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MELICPAGTPAALHDAVAVGADAIYCGFNDETNARNFPGLNFSREEMRESIAHAHRYGVNVLVAINTFARAGNVELWQRA
VDDAVEAEADAVILADVGVMDYCARTHPQQRLHVSVQAAAANADSIRFYVDSFNAKRVVLPRVLSVQEIAAITREVKCET
EVFIFGGLCVMEEGRCSLSSYATGKSPNMDGVCSPAGAIQYREENGALISRLGDFTINKFAKGEAAAYPTLCKGRYQTDE
GCGYLFEDPASLDATTMLPELRAAGVAALKIEGRQRGRAYIERVVKTFKEVLSALDDGRPLPVDALRGLSEGQSNTTGAY
KKTWR

Sequences:

>Translated_325_residues
MELICPAGTPAALHDAVAVGADAIYCGFNDETNARNFPGLNFSREEMRESIAHAHRYGVNVLVAINTFARAGNVELWQRA
VDDAVEAEADAVILADVGVMDYCARTHPQQRLHVSVQAAAANADSIRFYVDSFNAKRVVLPRVLSVQEIAAITREVKCET
EVFIFGGLCVMEEGRCSLSSYATGKSPNMDGVCSPAGAIQYREENGALISRLGDFTINKFAKGEAAAYPTLCKGRYQTDE
GCGYLFEDPASLDATTMLPELRAAGVAALKIEGRQRGRAYIERVVKTFKEVLSALDDGRPLPVDALRGLSEGQSNTTGAY
KKTWR
>Mature_325_residues
MELICPAGTPAALHDAVAVGADAIYCGFNDETNARNFPGLNFSREEMRESIAHAHRYGVNVLVAINTFARAGNVELWQRA
VDDAVEAEADAVILADVGVMDYCARTHPQQRLHVSVQAAAANADSIRFYVDSFNAKRVVLPRVLSVQEIAAITREVKCET
EVFIFGGLCVMEEGRCSLSSYATGKSPNMDGVCSPAGAIQYREENGALISRLGDFTINKFAKGEAAAYPTLCKGRYQTDE
GCGYLFEDPASLDATTMLPELRAAGVAALKIEGRQRGRAYIERVVKTFKEVLSALDDGRPLPVDALRGLSEGQSNTTGAY
KKTWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=45.3172205438066, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI1788397, Length=339, Percent_Identity=28.9085545722714, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081910, Length=302, Percent_Identity=29.1390728476821, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 35224; Mature: 35224

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELICPAGTPAALHDAVAVGADAIYCGFNDETNARNFPGLNFSREEMRESIAHAHRYGVN
CCEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCE
VLVAINTFARAGNVELWQRAVDDAVEAEADAVILADVGVMDYCARTHPQQRLHVSVQAAA
EEEEEECHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHEEEEEEEEC
ANADSIRFYVDSFNAKRVVLPRVLSVQEIAAITREVKCETEVFIFGGLCVMEEGRCSLSS
CCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHH
YATGKSPNMDGVCSPAGAIQYREENGALISRLGDFTINKFAKGEAAAYPTLCKGRYQTDE
CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCC
GCGYLFEDPASLDATTMLPELRAAGVAALKIEGRQRGRAYIERVVKTFKEVLSALDDGRP
CCCEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
LPVDALRGLSEGQSNTTGAYKKTWR
CCHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MELICPAGTPAALHDAVAVGADAIYCGFNDETNARNFPGLNFSREEMRESIAHAHRYGVN
CCEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCE
VLVAINTFARAGNVELWQRAVDDAVEAEADAVILADVGVMDYCARTHPQQRLHVSVQAAA
EEEEEECHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHEEEEEEEEC
ANADSIRFYVDSFNAKRVVLPRVLSVQEIAAITREVKCETEVFIFGGLCVMEEGRCSLSS
CCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHH
YATGKSPNMDGVCSPAGAIQYREENGALISRLGDFTINKFAKGEAAAYPTLCKGRYQTDE
CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCC
GCGYLFEDPASLDATTMLPELRAAGVAALKIEGRQRGRAYIERVVKTFKEVLSALDDGRP
CCCEEECCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
LPVDALRGLSEGQSNTTGAYKKTWR
CCHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]