Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is 86751013
Identifier: 86751013
GI number: 86751013
Start: 4456912
End: 4458162
Strand: Reverse
Name: 86751013
Synonym: RPB_3905
Alternate gene names: NA
Gene position: 4458162-4456912 (Counterclockwise)
Preceding gene: 86751016
Following gene: 86751012
Centisome position: 83.62
GC content: 69.54
Gene sequence:
>1251_bases GTGGAAACGCCTGCACAAAAGACCGGCACAACGCCGGCATTCATGCTCGACTCGCGCCAGGCCTGGATCAGGCTGGCGCT GGCGCTCGTCATCGGCTCGATCGGCAGCGTCGGGATGTGGTCGGTGGTGGTGGTGCTGCCGGTGGTGCAGACCGACTACG GCGCGACCCGCGCTGCGGCGTCGCTGGCCTTCACTTTGGCGATGCTCGGCTTCGGCCTCGGCGGGGTGGCGACCGGCAAG CTCACCGACCGTTTCGGCATCGTCGCGGCGATCGGCAGCGGCGTCGGGCTGATCGGGCTCGGCTATCTCGGCGCCGGTCT GTCGACCGCGCTGTGGCAGTTCAATCTGATGCATTTCGTGATCGGCGCCGGCGCCTCGGCGACGTTCGGCCCGCTGATGG CGGAGGCCTCGCACTGGTTTCTGCGCTATCGCGGCGTCGCGGTGTCGATCGCCGCCACCGGTAATTATCTCGGCGGCACG ATATGGCCGCCGCTGGTGAATTGGGCGACGCAGACCTACGGCTGGCGCGCCACCCACGTGGCGATCGGGGCGTTCTGCGT GGTGTCGATGGCGCTGGTGCTGGCGCTGCTGCGGGCGCGGATGGGCGGCCATGTGGTGGCCGCGCACACCGCGGCCCCGC CGCCGAAGATCGACCTGCAGCTCGGCACCAACACGCTGACGGCGCTGCTGTGCATGGCCGCGATCGCCTGCTGCGTGGCG ATGGCGATGCCGCAGGTCCATATCGTGGCGTATTGCGGCGACCTCGGCTACGGCGTCGCGCGCGGCGCCGAGATGCTGTC GCTGATGCTGGCCTGCGGCATCATCAGCCGGATCGGCTCCGGCTTCCTCGCCGACCGCATCGGCGGCATCGCGACGCTGC TGATCGGCGCGGTGGCGCAGGGCGCAGCGTTGCTGTTCTATCTGTTCTTCGACAGCCTGGTGTCGCTCTACGTGATCTCG GCGATGTTCGGCCTGTTCCAGGGCGGCATCGTGCCGGCCTATGCGATCATCGTGCGCGAGGCGATGCCGGCGCACGAAGC CGCCACCCGTGTCGGCATTGTGATCATGGCCTCGGTGGTCGGGATGTCGCTCGGCGGCTGGATCTCCGGCCTGATCTTCG ACGCCACCGGCTCCTACGCCGCCGCCTTCCTCAACGGCATCGGCTGGAACGCCCTCAACGTCGCCATCATGGCCGCGCTG CTGCTGCGCGCCAGGCGGCGCGGCGGCGGCTCACGGGTGGCGATGGCGTGA
Upstream 100 bases:
>100_bases TATGGTTAGGAAAGCGTTAACGCCGGTTAACCTGCGGCGTCATGGCAGCGGCGCGGCCGATGCCCTTGACCCTCGGCCCG CGTCCGGAGAAGTTGGCGGG
Downstream 100 bases:
>100_bases GGCGAGGGCGCCGCGCCTGCGCAAGGTAGCGATTGCCGCGCCGAACCCGTCATTGTATGCCGTCCCCGCACCGTCCGCCG CCCGAGCGGCCGCCGGCGGG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Oxalate/Formate Antiporter; Transporter Protein; Transporter Facilitator Family; Facilitator Superfamily Transporter; Oxalate/Formate Antiporter Protein
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues METPAQKTGTTPAFMLDSRQAWIRLALALVIGSIGSVGMWSVVVVLPVVQTDYGATRAAASLAFTLAMLGFGLGGVATGK LTDRFGIVAAIGSGVGLIGLGYLGAGLSTALWQFNLMHFVIGAGASATFGPLMAEASHWFLRYRGVAVSIAATGNYLGGT IWPPLVNWATQTYGWRATHVAIGAFCVVSMALVLALLRARMGGHVVAAHTAAPPPKIDLQLGTNTLTALLCMAAIACCVA MAMPQVHIVAYCGDLGYGVARGAEMLSLMLACGIISRIGSGFLADRIGGIATLLIGAVAQGAALLFYLFFDSLVSLYVIS AMFGLFQGGIVPAYAIIVREAMPAHEAATRVGIVIMASVVGMSLGGWISGLIFDATGSYAAAFLNGIGWNALNVAIMAAL LLRARRRGGGSRVAMA
Sequences:
>Translated_416_residues METPAQKTGTTPAFMLDSRQAWIRLALALVIGSIGSVGMWSVVVVLPVVQTDYGATRAAASLAFTLAMLGFGLGGVATGK LTDRFGIVAAIGSGVGLIGLGYLGAGLSTALWQFNLMHFVIGAGASATFGPLMAEASHWFLRYRGVAVSIAATGNYLGGT IWPPLVNWATQTYGWRATHVAIGAFCVVSMALVLALLRARMGGHVVAAHTAAPPPKIDLQLGTNTLTALLCMAAIACCVA MAMPQVHIVAYCGDLGYGVARGAEMLSLMLACGIISRIGSGFLADRIGGIATLLIGAVAQGAALLFYLFFDSLVSLYVIS AMFGLFQGGIVPAYAIIVREAMPAHEAATRVGIVIMASVVGMSLGGWISGLIFDATGSYAAAFLNGIGWNALNVAIMAAL LLRARRRGGGSRVAMA >Mature_416_residues METPAQKTGTTPAFMLDSRQAWIRLALALVIGSIGSVGMWSVVVVLPVVQTDYGATRAAASLAFTLAMLGFGLGGVATGK LTDRFGIVAAIGSGVGLIGLGYLGAGLSTALWQFNLMHFVIGAGASATFGPLMAEASHWFLRYRGVAVSIAATGNYLGGT IWPPLVNWATQTYGWRATHVAIGAFCVVSMALVLALLRARMGGHVVAAHTAAPPPKIDLQLGTNTLTALLCMAAIACCVA MAMPQVHIVAYCGDLGYGVARGAEMLSLMLACGIISRIGSGFLADRIGGIATLLIGAVAQGAALLFYLFFDSLVSLYVIS AMFGLFQGGIVPAYAIIVREAMPAHEAATRVGIVIMASVVGMSLGGWISGLIFDATGSYAAAFLNGIGWNALNVAIMAAL LLRARRRGGGSRVAMA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42475555, Length=319, Percent_Identity=26.6457680250784, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42848; Mature: 42848
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METPAQKTGTTPAFMLDSRQAWIRLALALVIGSIGSVGMWSVVVVLPVVQTDYGATRAAA CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH SLAFTLAMLGFGLGGVATGKLTDRFGIVAAIGSGVGLIGLGYLGAGLSTALWQFNLMHFV HHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH IGAGASATFGPLMAEASHWFLRYRGVAVSIAATGNYLGGTIWPPLVNWATQTYGWRATHV HCCCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHH AIGAFCVVSMALVLALLRARMGGHVVAAHTAAPPPKIDLQLGTNTLTALLCMAAIACCVA HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH MAMPQVHIVAYCGDLGYGVARGAEMLSLMLACGIISRIGSGFLADRIGGIATLLIGAVAQ HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GAALLFYLFFDSLVSLYVISAMFGLFQGGIVPAYAIIVREAMPAHEAATRVGIVIMASVV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH GMSLGGWISGLIFDATGSYAAAFLNGIGWNALNVAIMAALLLRARRRGGGSRVAMA HHHHHHHHHHHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEECCC >Mature Secondary Structure METPAQKTGTTPAFMLDSRQAWIRLALALVIGSIGSVGMWSVVVVLPVVQTDYGATRAAA CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH SLAFTLAMLGFGLGGVATGKLTDRFGIVAAIGSGVGLIGLGYLGAGLSTALWQFNLMHFV HHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH IGAGASATFGPLMAEASHWFLRYRGVAVSIAATGNYLGGTIWPPLVNWATQTYGWRATHV HCCCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHH AIGAFCVVSMALVLALLRARMGGHVVAAHTAAPPPKIDLQLGTNTLTALLCMAAIACCVA HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH MAMPQVHIVAYCGDLGYGVARGAEMLSLMLACGIISRIGSGFLADRIGGIATLLIGAVAQ HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GAALLFYLFFDSLVSLYVISAMFGLFQGGIVPAYAIIVREAMPAHEAATRVGIVIMASVV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH GMSLGGWISGLIFDATGSYAAAFLNGIGWNALNVAIMAALLLRARRRGGGSRVAMA HHHHHHHHHHHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA