| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is livF [H]
Identifier: 86750998
GI number: 86750998
Start: 4443588
End: 4444355
Strand: Reverse
Name: livF [H]
Synonym: RPB_3890
Alternate gene names: 86750998
Gene position: 4444355-4443588 (Counterclockwise)
Preceding gene: 86750999
Following gene: 86750997
Centisome position: 83.36
GC content: 70.18
Gene sequence:
>768_bases ATGACCGCGACAGCAACCGGCGACTTGCTGCTCGAAGCCGACAATATCGAGATCGGTTACGGCCGCGTCAATGTCGTGCA CGGCGCCAGCCTCAGCGTGCGGCGCGGCCAGATCATCGCCATCATCGGCCCCAACGGCGCCGGCAAGACCACGCTGCTCA GCGGCCTGATGGGGCTGCTGCCGGTGAAGGGCGCGCTGTCGTTCTTCGGCGAGACGATGGCCGAGCAGCCGAGCGTCGAG GCGCTGGTCGGGCGCGGCGTCACGCTGATCCCGGAGACCCGCGAATTGTTCGGGCCGATGAGCGTCGAGGACAATCTGCG GCTCGGCGGCTTCGCGCGCTGGCAGCAGGGCCATCGCGATCTCGACGCCGGCCTCGCCGAAGTCTACGCGCTGATGCCGC GGCTGCAGGAGCGCAAGCGCCAGGCGGCGAAGACGCTGTCCGGCGGCGAGCGCCAGATGCTGGCGATGGGCCGCGCGCTG ATGTCGAAGCCGCAACTGCTGCTGCTCGACGAGCCGAGCCTCGGGCTGGCGCCGCTGATCACCCGCGACATCCTGCGCAC GGTGGCGAGCCTGCGCGACCGCGGCATGTCGTGCCTGCTGGTCGAGCAGAACGCCAAGGCAGCGCTGCGCATCGCCGACT ACGCCTATGTGATGGAATCCGGCGCCTTCGTGCTGCAAGGCCCGGCCGCCGAGATCGCCGCCAATCCGGACGTCATCGCC AGCTATCTCGGCGTGCGCTCCGCCGCGGCGGCGGAGAGCCACGCCTGA
Upstream 100 bases:
>100_bases GCATCGTCGTCATGCAATTCGGTGAGAAGCTCGCCGAGGGCACGCCGTGCGAGATCCAGCGTAACCCGGCCGTGATCGAA GCCTATCTCGGAGGCGCCGA
Downstream 100 bases:
>100_bases ACCGCGGCCCGCCGAAGCGCGCGCTCCGGCGGTGACAGATTTCGCAGCAACAAGGAGCGCCTGCTCATGAACGCCCACGC CTCGATGACCCACATGACCG
Product: ABC transporter related
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTATATGDLLLEADNIEIGYGRVNVVHGASLSVRRGQIIAIIGPNGAGKTTLLSGLMGLLPVKGALSFFGETMAEQPSVE ALVGRGVTLIPETRELFGPMSVEDNLRLGGFARWQQGHRDLDAGLAEVYALMPRLQERKRQAAKTLSGGERQMLAMGRAL MSKPQLLLLDEPSLGLAPLITRDILRTVASLRDRGMSCLLVEQNAKAALRIADYAYVMESGAFVLQGPAAEIAANPDVIA SYLGVRSAAAAESHA
Sequences:
>Translated_255_residues MTATATGDLLLEADNIEIGYGRVNVVHGASLSVRRGQIIAIIGPNGAGKTTLLSGLMGLLPVKGALSFFGETMAEQPSVE ALVGRGVTLIPETRELFGPMSVEDNLRLGGFARWQQGHRDLDAGLAEVYALMPRLQERKRQAAKTLSGGERQMLAMGRAL MSKPQLLLLDEPSLGLAPLITRDILRTVASLRDRGMSCLLVEQNAKAALRIADYAYVMESGAFVLQGPAAEIAANPDVIA SYLGVRSAAAAESHA >Mature_254_residues TATATGDLLLEADNIEIGYGRVNVVHGASLSVRRGQIIAIIGPNGAGKTTLLSGLMGLLPVKGALSFFGETMAEQPSVEA LVGRGVTLIPETRELFGPMSVEDNLRLGGFARWQQGHRDLDAGLAEVYALMPRLQERKRQAAKTLSGGERQMLAMGRALM SKPQLLLLDEPSLGLAPLITRDILRTVASLRDRGMSCLLVEQNAKAALRIADYAYVMESGAFVLQGPAAEIAANPDVIAS YLGVRSAAAAESHA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=173, Percent_Identity=31.7919075144509, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=31.4553990610329, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI153792144, Length=161, Percent_Identity=32.2981366459627, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI148612844, Length=238, Percent_Identity=30.2521008403361, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI255708477, Length=238, Percent_Identity=30.2521008403361, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI27262624, Length=194, Percent_Identity=24.2268041237113, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262626, Length=194, Percent_Identity=24.2268041237113, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI21536376, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI47078218, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI45446740, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI11967971, Length=225, Percent_Identity=27.5555555555556, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI116734710, Length=163, Percent_Identity=30.6748466257669, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI42490749, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI9961252, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI4505771, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082268, Length=237, Percent_Identity=44.7257383966245, Blast_Score=197, Evalue=5e-52, Organism=Escherichia coli, GI1789593, Length=238, Percent_Identity=32.3529411764706, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=28.8537549407115, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI87081791, Length=229, Percent_Identity=31.4410480349345, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=26.7543859649123, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=32.7354260089686, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=28.6324786324786, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=29.7413793103448, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787792, Length=249, Percent_Identity=28.9156626506024, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=31.1627906976744, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790162, Length=245, Percent_Identity=25.7142857142857, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=27.9475982532751, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789586, Length=235, Percent_Identity=31.4893617021277, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=29.7520661157025, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=29.646017699115, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=27.1604938271605, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786803, Length=245, Percent_Identity=28.9795918367347, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=225, Percent_Identity=28, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790739, Length=247, Percent_Identity=27.1255060728745, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=26.0162601626016, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=25.1012145748988, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87082267, Length=232, Percent_Identity=29.7413793103448, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI87081782, Length=198, Percent_Identity=26.7676767676768, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=28.82096069869, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=241, Percent_Identity=27.3858921161826, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787758, Length=220, Percent_Identity=29.5454545454545, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=28.9592760180996, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788506, Length=248, Percent_Identity=27.8225806451613, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=28.3261802575107, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=210, Percent_Identity=27.1428571428571, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=23.75, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=30.5555555555556, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=27.8969957081545, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=27.6699029126214, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=244, Percent_Identity=25.8196721311475, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48994943, Length=219, Percent_Identity=28.7671232876712, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=25.2136752136752, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790525, Length=232, Percent_Identity=25, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786698, Length=231, Percent_Identity=28.1385281385281, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788002, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI48994883, Length=260, Percent_Identity=24.6153846153846, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=26.2008733624454, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=29.2237442922374, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=199, Percent_Identity=28.643216080402, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=215, Percent_Identity=31.6279069767442, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786345, Length=234, Percent_Identity=27.3504273504274, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788053, Length=172, Percent_Identity=29.6511627906977, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983523, Length=207, Percent_Identity=28.9855072463768, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71983516, Length=207, Percent_Identity=28.9855072463768, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71983510, Length=207, Percent_Identity=28.9855072463768, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17510237, Length=205, Percent_Identity=27.8048780487805, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=27.1111111111111, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17539902, Length=214, Percent_Identity=26.6355140186916, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115533608, Length=187, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=30.2752293577982, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24666092, Length=205, Percent_Identity=30.7317073170732, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24650855, Length=200, Percent_Identity=27, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24650853, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24643674, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI85724858, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI85724856, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580547, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580551, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580549, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580545, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI281362751, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648314, Length=219, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574533, Length=225, Percent_Identity=24.8888888888889, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281363262, Length=242, Percent_Identity=23.5537190082645, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24653245, Length=223, Percent_Identity=23.7668161434978, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24582014, Length=163, Percent_Identity=30.6748466257669, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24582012, Length=163, Percent_Identity=30.6748466257669, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI85816269, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580553, Length=219, Percent_Identity=26.4840182648402, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI85724864, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24580555, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27035; Mature: 26904
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATATGDLLLEADNIEIGYGRVNVVHGASLSVRRGQIIAIIGPNGAGKTTLLSGLMGLL CCCCCCCCEEEEECCEEECCCEEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHHH PVKGALSFFGETMAEQPSVEALVGRGVTLIPETRELFGPMSVEDNLRLGGFARWQQGHRD HHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHCCCCCCCCCCCCCCCHHHHHCCHH LDAGLAEVYALMPRLQERKRQAAKTLSGGERQMLAMGRALMSKPQLLLLDEPSLGLAPLI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH TRDILRTVASLRDRGMSCLLVEQNAKAALRIADYAYVMESGAFVLQGPAAEIAANPDVIA HHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHCCCEEEECCCHHHCCCHHHHH SYLGVRSAAAAESHA HHHHHHHHHHHCCCC >Mature Secondary Structure TATATGDLLLEADNIEIGYGRVNVVHGASLSVRRGQIIAIIGPNGAGKTTLLSGLMGLL CCCCCCCEEEEECCEEECCCEEEEEECCCEEEECCCEEEEECCCCCCHHHHHHHHHHHH PVKGALSFFGETMAEQPSVEALVGRGVTLIPETRELFGPMSVEDNLRLGGFARWQQGHRD HHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHCCCCCCCCCCCCCCCHHHHHCCHH LDAGLAEVYALMPRLQERKRQAAKTLSGGERQMLAMGRALMSKPQLLLLDEPSLGLAPLI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH TRDILRTVASLRDRGMSCLLVEQNAKAALRIADYAYVMESGAFVLQGPAAEIAANPDVIA HHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHCCCEEEECCCHHHCCCHHHHH SYLGVRSAAAAESHA HHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]