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The map label for this gene is lolC [H]

Identifier: 86750990

GI number: 86750990

Start: 4436412

End: 4437638

Strand: Reverse

Name: lolC [H]

Synonym: RPB_3882

Alternate gene names: 86750990

Gene position: 4437638-4436412 (Counterclockwise)

Preceding gene: 86750991

Following gene: 86750989

Centisome position: 83.23

GC content: 68.3

Gene sequence:

>1227_bases
GTGAAGCGCTGGCTGCCGTTCGCCTGGATCGCCGCGGTGCGCTTCCTGCTCGACGGCGCACTGCAGACGCTGGTGATCGT
CGGCGGCATCGCCATCGGCGTCGGCGTCATCGTCTTCATGTCGGCGATGCTGGCGGGGCTGCAGGCGAACTTCATCAAGC
GCGTGCTCACCTCGCAGCCGCAGATCCAGCTGATCCCGCCGGATCAGGTGGCGCGGCCGCTGCGCGACGAGCCGGGCACC
GTCGAGATCGCGACGGTGCAGCGCCCGACCCAGCGGGTGATTTCGATCGACCAATGGCCGAAGATCCGCGCCGAGATGCA
GGCGCGGCCGGACGTCGTCTACGCCGCCGCCACCGCGTCCGGCTCGGCGCTGGCGCTGCGCGGCGACACCAGCCGCGCCA
TCACGCTGTACGGCATCGAGCCGGAGATCTATTTCCAGATCGTCAAGGTGCCGGATTTCATCGTCGCCGGCGAAGCCCAG
ATCACCACCGAGGGCATCCTGATCGGCGTCGAACTGGCGCGCGATCTCGGCGCCTCGCTCGGCGACAAGCTCATCGTGTC
GACCTCGCTCGCCGGCAATCGCGTCCTCACCATCAAGGGCATCTTCGATTTCGGCAACAAGGCCGCCAATCAGCGCAACA
CCTTCGTGACGCTGCGCAACGCCCAGAGCATGCTCGGCCTGATCGGCGGCATCACCTCGGTCGACATCACCGTGGCGGAC
ATCTACACCGCCGAGACCATCGCGCAGGAGATCCAGGCGACGTTGCCGGTGAAGGCCGACAGCTGGATCAGGACCAACGC
GCAGTTCTTCACCGCGGTGAAGGCGCAGCAGAATTCCAACACGCTGATCCGGCTGTTCGTCGGCCTGTCGGTGGCGTTCG
GCATCGCGGCGGTGCTGATCGTCTCGGTGATCCAGCGCTCCAAGGACATCGGCATCCTGCGCGCGATGGGCGCGCGCCGC
GGGCAGATCCTGCGCGTGTTCCTGATCCAGGGCGGGCTGCTCGGCTTCGTCGGCGCGCTGATCGGCTCCGGCCTCGGCGC
GCTCGCGCTGTTCGTGTGGCACCAGTCGGCGCGCCAGGTCGACGGCAGCGAGCTGTTTCCGCTGATCCTCGAATCCGAAT
TGTTCATCGCGTCGTCGCTGCTGGCGACGCTCACCGGCGTCGCGGCGGCGATCGCGCCGGCGCTGCGCGCGGCGCGGCTC
GATCCGGTGGTGGCGATCCGTGGCTGA

Upstream 100 bases:

>100_bases
TCGGCGCCTACGAAGTGATCGAGGGGCTTTCGCCGGGCGACCGGGTGATTCCGCTCGCCACCGGCGTCGTGCCCGACCAG
CGCGTCCGCGTGGTCGCGCC

Downstream 100 bases:

>100_bases
AGTCCTGCGCCTCGACGGCATCCGCAAATCCTACAATGTCGGCACCCCGGTCGAGACCGAGGTGCTGCACGGCATCGACC
TGACCTTGCAGGCGCGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKRWLPFAWIAAVRFLLDGALQTLVIVGGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQPQIQLIPPDQVARPLRDEPGT
VEIATVQRPTQRVISIDQWPKIRAEMQARPDVVYAAATASGSALALRGDTSRAITLYGIEPEIYFQIVKVPDFIVAGEAQ
ITTEGILIGVELARDLGASLGDKLIVSTSLAGNRVLTIKGIFDFGNKAANQRNTFVTLRNAQSMLGLIGGITSVDITVAD
IYTAETIAQEIQATLPVKADSWIRTNAQFFTAVKAQQNSNTLIRLFVGLSVAFGIAAVLIVSVIQRSKDIGILRAMGARR
GQILRVFLIQGGLLGFVGALIGSGLGALALFVWHQSARQVDGSELFPLILESELFIASSLLATLTGVAAAIAPALRAARL
DPVVAIRG

Sequences:

>Translated_408_residues
MKRWLPFAWIAAVRFLLDGALQTLVIVGGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQPQIQLIPPDQVARPLRDEPGT
VEIATVQRPTQRVISIDQWPKIRAEMQARPDVVYAAATASGSALALRGDTSRAITLYGIEPEIYFQIVKVPDFIVAGEAQ
ITTEGILIGVELARDLGASLGDKLIVSTSLAGNRVLTIKGIFDFGNKAANQRNTFVTLRNAQSMLGLIGGITSVDITVAD
IYTAETIAQEIQATLPVKADSWIRTNAQFFTAVKAQQNSNTLIRLFVGLSVAFGIAAVLIVSVIQRSKDIGILRAMGARR
GQILRVFLIQGGLLGFVGALIGSGLGALALFVWHQSARQVDGSELFPLILESELFIASSLLATLTGVAAAIAPALRAARL
DPVVAIRG
>Mature_408_residues
MKRWLPFAWIAAVRFLLDGALQTLVIVGGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQPQIQLIPPDQVARPLRDEPGT
VEIATVQRPTQRVISIDQWPKIRAEMQARPDVVYAAATASGSALALRGDTSRAITLYGIEPEIYFQIVKVPDFIVAGEAQ
ITTEGILIGVELARDLGASLGDKLIVSTSLAGNRVLTIKGIFDFGNKAANQRNTFVTLRNAQSMLGLIGGITSVDITVAD
IYTAETIAQEIQATLPVKADSWIRTNAQFFTAVKAQQNSNTLIRLFVGLSVAFGIAAVLIVSVIQRSKDIGILRAMGARR
GQILRVFLIQGGLLGFVGALIGSGLGALALFVWHQSARQVDGSELFPLILESELFIASSLLATLTGVAAAIAPALRAARL
DPVVAIRG

Specific function: Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787362, Length=409, Percent_Identity=22.7383863080685, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43472; Mature: 43472

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWLPFAWIAAVRFLLDGALQTLVIVGGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QIQLIPPDQVARPLRDEPGTVEIATVQRPTQRVISIDQWPKIRAEMQARPDVVYAAATAS
CEEEECCHHHHHCCCCCCCEEEEEECCCCHHHHEECCCCCHHHHHHCCCCCEEEEEECCC
GSALALRGDTSRAITLYGIEPEIYFQIVKVPDFIVAGEAQITTEGILIGVELARDLGASL
CCEEEEECCCCCEEEEEECCCEEEEEEEECCCEEEECCCEEEECCEEEEHHHHHHHCCCC
GDKLIVSTSLAGNRVLTIKGIFDFGNKAANQRNTFVTLRNAQSMLGLIGGITSVDITVAD
CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHCCCCEEEEEEEH
IYTAETIAQEIQATLPVKADSWIRTNAQFFTAVKAQQNSNTLIRLFVGLSVAFGIAAVLI
HHHHHHHHHHHHHHCCCCCCCCEECCHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHHH
VSVIQRSKDIGILRAMGARRGQILRVFLIQGGLLGFVGALIGSGLGALALFVWHQSARQV
HHHHHCCCCCHHHHHHCCCCCCEEEEEEHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
DGSELFPLILESELFIASSLLATLTGVAAAIAPALRAARLDPVVAIRG
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MKRWLPFAWIAAVRFLLDGALQTLVIVGGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QIQLIPPDQVARPLRDEPGTVEIATVQRPTQRVISIDQWPKIRAEMQARPDVVYAAATAS
CEEEECCHHHHHCCCCCCCEEEEEECCCCHHHHEECCCCCHHHHHHCCCCCEEEEEECCC
GSALALRGDTSRAITLYGIEPEIYFQIVKVPDFIVAGEAQITTEGILIGVELARDLGASL
CCEEEEECCCCCEEEEEECCCEEEEEEEECCCEEEECCCEEEECCEEEEHHHHHHHCCCC
GDKLIVSTSLAGNRVLTIKGIFDFGNKAANQRNTFVTLRNAQSMLGLIGGITSVDITVAD
CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHCCCCEEEEEEEH
IYTAETIAQEIQATLPVKADSWIRTNAQFFTAVKAQQNSNTLIRLFVGLSVAFGIAAVLI
HHHHHHHHHHHHHHCCCCCCCCEECCHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHHH
VSVIQRSKDIGILRAMGARRGQILRVFLIQGGLLGFVGALIGSGLGALALFVWHQSARQV
HHHHHCCCCCHHHHHHCCCCCCEEEEEEHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
DGSELFPLILESELFIASSLLATLTGVAAAIAPALRAARLDPVVAIRG
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]