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The map label for this gene is 86750501

Identifier: 86750501

GI number: 86750501

Start: 3874401

End: 3875006

Strand: Direct

Name: 86750501

Synonym: RPB_3390

Alternate gene names: NA

Gene position: 3874401-3875006 (Clockwise)

Preceding gene: 86750500

Following gene: 86750502

Centisome position: 72.67

GC content: 60.4

Gene sequence:

>606_bases
TTGCAGGCCTTGCTGGGACTGAGCAGGAAGATCGACGCGTTCAACACGCTGATCGGGCGCTGGTTGTCGTGGATGATCGT
CGTCGCGGTGATCATTTCGGCGGGCAACGCGGTCATCCGCAAGGTGTTCGACATGTCGTCGAACTCCTTCCTCGAGGCGC
AATGGGTGCTGTTCAGCGTCGTGTTCCTGCTGTGCTCGCCCTGGACGCTGCTCAAGAACGAACATATCCGGATCGACATC
ATCAATCATTCCCTGCCGCTGAAAGTCCGCGGCTGGATCGACATGATCGGCCATGTGTTCTTCCTGATGCCGTTCGCGAT
CATCCTGCTGTGGTGGTCGATCCCGTTCTTCCTGGTCTCCTACCACCAGAACGAACAATCGTTCAGCGCCGGCGGCCTGC
CGCAATGGCCGGCGAAGTCGCTGATCATGATCGCCTGCGTCCTGCTGATCGTTCAGGGCATCTCGGAAATCATCAAGCGC
GCTGCGATGATGGCGGGGGTGATCCCCGACAGCAACGTGCTGCAGGGGTCGGCGCATGCGGCGGAACTCGAAGCCGAGCG
GCTGGTGATGCATATCGCCGGCGAGAAGCAGCCTCGAGCCGAATAG

Upstream 100 bases:

>100_bases
CGTTACACGCTGAAATGGTGCCCCCGCTTCGCGCCTCCGGCTGTGTGAGCTACTTCGCGCATATCACCAAGACCGGGCAG
GAACGGGAGGAGACCGGACG

Downstream 100 bases:

>100_bases
TGGTCATTGTGTTGGGGGACTGTTTCGAATGACCGCTATGTTGATCCACTACATGGCGCCGATCATGTTCGGCTCCCTGG
TGATCTTCCTGTTGCTCGGC

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; TRAP-Type Transporter Small Permease Component; Tripartite Transporter Small Subunit; TRAP-T Family Tripartite Transporter; Mannitol Transporter; Tripartite ATP-Independent Periplasmic Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; Permease; TRAP Transporter DctQ Family Protein; Transmembrane Transporter Component; TRAP C4-Dicarboxylate Transport System DctQ Subunit; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; TRAP Dicarboxylate Family Transporter DctQ Subunit; Small Permease Of TRAP-Type Transporter; Trap-Type Transport System Small Permease Component; TRAP-Type Large Permease Component; TRAP Transporter Small Transmembrane Protein; Transporter DctQ-Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP-Type Transport System Small Permease Component; TRAP Transporter Small Subunit; C4-Dicarboxylate Transporter Permease; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic Protein; Tripartite ATP-Independent Periplasmic; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQALLGLSRKIDAFNTLIGRWLSWMIVVAVIISAGNAVIRKVFDMSSNSFLEAQWVLFSVVFLLCSPWTLLKNEHIRIDI
INHSLPLKVRGWIDMIGHVFFLMPFAIILLWWSIPFFLVSYHQNEQSFSAGGLPQWPAKSLIMIACVLLIVQGISEIIKR
AAMMAGVIPDSNVLQGSAHAAELEAERLVMHIAGEKQPRAE

Sequences:

>Translated_201_residues
MQALLGLSRKIDAFNTLIGRWLSWMIVVAVIISAGNAVIRKVFDMSSNSFLEAQWVLFSVVFLLCSPWTLLKNEHIRIDI
INHSLPLKVRGWIDMIGHVFFLMPFAIILLWWSIPFFLVSYHQNEQSFSAGGLPQWPAKSLIMIACVLLIVQGISEIIKR
AAMMAGVIPDSNVLQGSAHAAELEAERLVMHIAGEKQPRAE
>Mature_201_residues
MQALLGLSRKIDAFNTLIGRWLSWMIVVAVIISAGNAVIRKVFDMSSNSFLEAQWVLFSVVFLLCSPWTLLKNEHIRIDI
INHSLPLKVRGWIDMIGHVFFLMPFAIILLWWSIPFFLVSYHQNEQSFSAGGLPQWPAKSLIMIACVLLIVQGISEIIKR
AAMMAGVIPDSNVLQGSAHAAELEAERLVMHIAGEKQPRAE

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22550; Mature: 22550

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALLGLSRKIDAFNTLIGRWLSWMIVVAVIISAGNAVIRKVFDMSSNSFLEAQWVLFSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
VFLLCSPWTLLKNEHIRIDIINHSLPLKVRGWIDMIGHVFFLMPFAIILLWWSIPFFLVS
HHHHHCCHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHQNEQSFSAGGLPQWPAKSLIMIACVLLIVQGISEIIKRAAMMAGVIPDSNVLQGSAHA
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHH
AELEAERLVMHIAGEKQPRAE
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQALLGLSRKIDAFNTLIGRWLSWMIVVAVIISAGNAVIRKVFDMSSNSFLEAQWVLFSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
VFLLCSPWTLLKNEHIRIDIINHSLPLKVRGWIDMIGHVFFLMPFAIILLWWSIPFFLVS
HHHHHCCHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHQNEQSFSAGGLPQWPAKSLIMIACVLLIVQGISEIIKRAAMMAGVIPDSNVLQGSAHA
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHH
AELEAERLVMHIAGEKQPRAE
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA