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The map label for this gene is intZ [H]

Identifier: 86750417

GI number: 86750417

Start: 3780879

End: 3782231

Strand: Direct

Name: intZ [H]

Synonym: RPB_3306

Alternate gene names: 86750417

Gene position: 3780879-3782231 (Clockwise)

Preceding gene: 86750416

Following gene: 86750418

Centisome position: 70.91

GC content: 58.98

Gene sequence:

>1353_bases
ATGCCATCACAACCCGCGCCCCTAACGCCATTTGCGATCGCCAACGCCAAGCCCAAGCCGACCCGGTATGAGATCAGCGA
CGGCGGACACGCCGGCCTGCGCGTTATCGTGCAGCCGTCTGGCATCAAGTCGTTCGTGTTCCGATACAAACGAGGGACGG
GGGAAGCTGCGAAAAATGTGCGGATTATGTTGGGTCGCGCAGCCGGTCCCGGCGCGCTCACCTTGCGGCAGGCACGCGAA
GCGGCCGACTCCCACCGCCGGCTCAAGCTGACGGGGGCGGACCCTGCCGACCAGCGCAGAGTGGAACGGGCCGCAAATCT
TGCGCGAATCAGGGCCGAAGAGATCGAAAATCGCCGGAAAGACGACACCGTTGCGCTCGTCTTGGAACGCTACTTCAAGA
GTCATGTTAACGGCCTTCTCTCTGCTCGGGAGACGAAACGTATTTTGACGCGCGAACTAAGCGGTTGGGCACGGCGGCGG
ATCGATCATGTTTCGCGTGCCGATGCCGTCAAATTACTTGAAGCAATCCAAGAGCGAGACAAACCCATCCTCGCGAACCG
GACCCGCGCGCACGCAAGTAAGTTCTTCAAGTGGTGTATTGAGAAGGGGTTGCTTGAGATCAATCCATTCGAACACACCA
CGCGGGCAGCCAAGGAAATCGCTCGTGATCGCGTCTTGAGCGATGCCGAGCTGCGCATTTTGTTGCTTGCGAACGACCGC
CTTGAATGGCCATGGCGAGAGTACATTGCGGTTCTGCTCATGCTCGGCCAGCGCCGCGAGGAGGTTGCCGGGATGCGCTG
GGACGCGCTGGACCTTGATTGTGCCGAACCGGTGTGGCTGATGGCCGCGTCGCGATACAAGAACGGCCAACCTCACGCCG
TTCCCCTCCCCGCCGCTGTCGTCTCGATCCTCCGCAGCATCGGTCGGATGCACTTCACTGAGATCATTGACGGTGCGCCG
ACGCTCAAGGAGTCGCCGTTCGTTTTCACGACGACGGGCCGCACCGCAATTAGCGGCTTCTCGAAAGCGAAAGTTCAACT
CACCGGAATCATGCACGAAATAGCTTGTGGTGAAGCGAAGGCCCGGGGCGAATCCACCGCTACCATTGAAAAGATCGAAT
GGCGTCTGCACGACCTGCGGCGCACAATGGCAACGACCATGGCACGCCTAAAAATTAACGTTGTAACGATTGAACGCGTC
TTGGGGCACAAGATGCAAGGTGTCATGGCCGTCTATCAGCGGTACGACTACCTACCCGAAAAGCTCCACGCACTCACCGT
TTGGAATGACCATATTGCGAGGATAGTAGCTCCTCAGCAATCGAATGTCGTTCGCATGACCGTCGCAGGCTGA

Upstream 100 bases:

>100_bases
TATCAAGGTTCAACGCAACCCTAGGTGTCTCAACGCCAGTCAAGATGCAGGTGTCCCCTCAGGTGTCCCCGAGGCGTCCC
TGGTCGTAAGCGAGAAATCC

Downstream 100 bases:

>100_bases
TATGGCAAAGATCGACTTAATTGGCTCCGAAATCGAGAACCTTACGGATTACTTCAACCGCACCAGCAACCCGGCTGCAG
CTTGGCGCGTGTTCAGCCTG

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MPSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYKRGTGEAAKNVRIMLGRAAGPGALTLRQARE
AADSHRRLKLTGADPADQRRVERAANLARIRAEEIENRRKDDTVALVLERYFKSHVNGLLSARETKRILTRELSGWARRR
IDHVSRADAVKLLEAIQERDKPILANRTRAHASKFFKWCIEKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDR
LEWPWREYIAVLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAVVSILRSIGRMHFTEIIDGAP
TLKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAKARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERV
LGHKMQGVMAVYQRYDYLPEKLHALTVWNDHIARIVAPQQSNVVRMTVAG

Sequences:

>Translated_450_residues
MPSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYKRGTGEAAKNVRIMLGRAAGPGALTLRQARE
AADSHRRLKLTGADPADQRRVERAANLARIRAEEIENRRKDDTVALVLERYFKSHVNGLLSARETKRILTRELSGWARRR
IDHVSRADAVKLLEAIQERDKPILANRTRAHASKFFKWCIEKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDR
LEWPWREYIAVLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAVVSILRSIGRMHFTEIIDGAP
TLKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAKARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERV
LGHKMQGVMAVYQRYDYLPEKLHALTVWNDHIARIVAPQQSNVVRMTVAG
>Mature_449_residues
PSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYKRGTGEAAKNVRIMLGRAAGPGALTLRQAREA
ADSHRRLKLTGADPADQRRVERAANLARIRAEEIENRRKDDTVALVLERYFKSHVNGLLSARETKRILTRELSGWARRRI
DHVSRADAVKLLEAIQERDKPILANRTRAHASKFFKWCIEKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDRL
EWPWREYIAVLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAVVSILRSIGRMHFTEIIDGAPT
LKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAKARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERVL
GHKMQGVMAVYQRYDYLPEKLHALTVWNDHIARIVAPQQSNVVRMTVAG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=447, Percent_Identity=24.1610738255034, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50679; Mature: 50548

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYKRGTGEAAKNV
CCCCCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHCCE
RIMLGRAAGPGALTLRQAREAADSHRRLKLTGADPADQRRVERAANLARIRAEEIENRRK
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DDTVALVLERYFKSHVNGLLSARETKRILTRELSGWARRRIDHVSRADAVKLLEAIQERD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPILANRTRAHASKFFKWCIEKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDR
CCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
LEWPWREYIAVLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAV
CCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
VSILRSIGRMHFTEIIDGAPTLKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAK
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCHHHEEHHHHHHHHHCCCHH
ARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERVLGHKMQGVMAVYQRYDYLPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCHH
KLHALTVWNDHIARIVAPQQSNVVRMTVAG
HHHEEEEECHHHHHEECCCCCCEEEEEECC
>Mature Secondary Structure 
PSQPAPLTPFAIANAKPKPTRYEISDGGHAGLRVIVQPSGIKSFVFRYKRGTGEAAKNV
CCCCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHCCE
RIMLGRAAGPGALTLRQAREAADSHRRLKLTGADPADQRRVERAANLARIRAEEIENRRK
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DDTVALVLERYFKSHVNGLLSARETKRILTRELSGWARRRIDHVSRADAVKLLEAIQERD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPILANRTRAHASKFFKWCIEKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDR
CCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
LEWPWREYIAVLLMLGQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAV
CCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
VSILRSIGRMHFTEIIDGAPTLKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAK
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCHHHEEHHHHHHHHHCCCHH
ARGESTATIEKIEWRLHDLRRTMATTMARLKINVVTIERVLGHKMQGVMAVYQRYDYLPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCHH
KLHALTVWNDHIARIVAPQQSNVVRMTVAG
HHHEEEEECHHHHHEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]