Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 86750416

GI number: 86750416

Start: 3779834

End: 3780421

Strand: Direct

Name: ycfQ [H]

Synonym: RPB_3305

Alternate gene names: 86750416

Gene position: 3779834-3780421 (Clockwise)

Preceding gene: 86750413

Following gene: 86750417

Centisome position: 70.89

GC content: 65.82

Gene sequence:

>588_bases
ATGGTTATGGGACGACCGCGCGAATTCGACGTCGACAAGGCGCTCGACCTCGCTTTGCACGTCTTCTGGCGCAAGGGCTA
TGAAGGCACCTCGATGTCCGATCTGACCGAGGCGATGGGGATCACCAAGCCGAGCCTGTACGCCGCGTTCGGCAACAAGG
AAGATCTGTTCCGCAAGGCGTTCGACCGCTACGTCGACGGACCCGGCGGCTATTTCCAGGCCGGATTGCTGCAGCCCACC
GCCCGCAAGGTGGTGGAGCACATCCTGTACGGAGCGGTCGAGGCGATGACCGATCCGAACAATCCCGGATGTCTCGCCGT
TCAGGGAGCGTTGTGCTGTGGCGAGGCCGCCGAGACGATCAAGCAGGAACTGACCGCGCGCCGGGCGAAAGGTGAACAGG
AGCTCTGCGAACGTTTCGACCGCGCCATCGCCGACGGCGATCTGCCCGCCGAGTCCAATGCCGGCGATCTGGCGCGCTAT
GTCTCGGCTATTCTGCAGGGCATGGCGGTGCAAGCCGCCGGCGCCGCCACGCCCGAGCAGCTCCGCAAGCTCGCCGACAT
GGCGCTACGCGGCTGGCCGCCGGCCTGA

Upstream 100 bases:

>100_bases
TGCGATGCACACATTCGTACCGCCCGGTATAGATGGGCCATCGACATCCCCTGTCAAGAGACTTATCTACCGATTGGTAG
AAATCTCTGGAGGCGCCGAT

Downstream 100 bases:

>100_bases
CGACCGATCAGTTCGCACCAACGCAACCGAGCGGCCGTTCGAGCTCTGCGCGATCGGCAGCATGGGCGTCCGCTGACCAT
GCGCACTGATGATGAGATCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAFGNKEDLFRKAFDRYVDGPGGYFQAGLLQPT
ARKVVEHILYGAVEAMTDPNNPGCLAVQGALCCGEAAETIKQELTARRAKGEQELCERFDRAIADGDLPAESNAGDLARY
VSAILQGMAVQAAGAATPEQLRKLADMALRGWPPA

Sequences:

>Translated_195_residues
MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAFGNKEDLFRKAFDRYVDGPGGYFQAGLLQPT
ARKVVEHILYGAVEAMTDPNNPGCLAVQGALCCGEAAETIKQELTARRAKGEQELCERFDRAIADGDLPAESNAGDLARY
VSAILQGMAVQAAGAATPEQLRKLADMALRGWPPA
>Mature_195_residues
MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAFGNKEDLFRKAFDRYVDGPGGYFQAGLLQPT
ARKVVEHILYGAVEAMTDPNNPGCLAVQGALCCGEAAETIKQELTARRAKGEQELCERFDRAIADGDLPAESNAGDLARY
VSAILQGMAVQAAGAATPEQLRKLADMALRGWPPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=199, Percent_Identity=37.1859296482412, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082397, Length=168, Percent_Identity=30.3571428571429, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21113; Mature: 21113

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAFGNKEDLFRKA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHH
FDRYVDGPGGYFQAGLLQPTARKVVEHILYGAVEAMTDPNNPGCLAVQGALCCGEAAETI
HHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
KQELTARRAKGEQELCERFDRAIADGDLPAESNAGDLARYVSAILQGMAVQAAGAATPEQ
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRKLADMALRGWPPA
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAFGNKEDLFRKA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHH
FDRYVDGPGGYFQAGLLQPTARKVVEHILYGAVEAMTDPNNPGCLAVQGALCCGEAAETI
HHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
KQELTARRAKGEQELCERFDRAIADGDLPAESNAGDLARYVSAILQGMAVQAAGAATPEQ
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRKLADMALRGWPPA
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]