| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is quiA [H]
Identifier: 86750322
GI number: 86750322
Start: 3672616
End: 3675129
Strand: Direct
Name: quiA [H]
Synonym: RPB_3211
Alternate gene names: 86750322
Gene position: 3672616-3675129 (Clockwise)
Preceding gene: 86750321
Following gene: 86750327
Centisome position: 68.88
GC content: 68.18
Gene sequence:
>2514_bases ATGCCCGCCGATACGACGCATCCGAGATTCGCAAAGCGTCGCGGCTGGCGATGGCTCTATGTCGGCCTGGCGACATTGGT CGGCGTACTCGGACTGATCATGGCCGTGCTCGGCGGCTGGCTGATCGCACTCGGCGGCTCCTTCTACTATCTTGGCGCGG GCGCGTTGCTGGCGCTCGGCGCAGCCCTGGTCTGGACAGGCCGCGATCGCGCGGCCTTCCTGCTGTTCGCCGGCGCTTTC CTGCTCACAATTATCTGGTCGCTGGTCGAGATCGCCGGCAAAGGCTGGCTGCCGGCCTGGGGCATCGATTTCGCCGGCCG CGTCGGCGTTCTTGCAGCGCTGTTGGCCGGCGTCGGCCTCGCTTATCTGCTGTGGCGCGCCGCGCCGCGTTCGACGCCGC GCAAACTCGCGCTGGCCTCAGCACTTAGTATCTTTATCGCTCTGGGTGGGCTCGTCTATGCAAGCTGGGAAACCACCGAA CCGGCGAGCGAACGCGACAGCGCGGCGAGCGGCGCTCCCGCCGGCGGCGGCGCCATGCAGGAAGCCGGCGCGGACTGGAC CGCGTTCGGCGGCACCACCGGAGGACGCCGCTATTCGAGCTTGAGCCAGGTGTCCACCGCCAACGTCACCACCTTGCAGG AAGCCTGGACGTTTCGCAGCGGCGATCTCAATCCCGATCCCGGGCGCGTCTTCTATTCCGCCCAGAACACGCCGATCAAG GTCGGGGACCTGCTCTACACCTGCACGCCGACCAATCGCGTGTTCGCACTCGATCCGGGCACCGGCAACGTGCGCTGGAG TCACGACCCCAAGGTGCCGGCGAGCGCGATGGAGTCGCTGTTCACCGCGGCGTGTCGCGCCGTCGCCTATTTCGACGATG GCGAAGCCGCGGGTGCGCCGGAATCGATTGCAACGATGCCCGCTGTTCCTGGCGCGATTCGTCCGGTGCCGCGCGGGGGC AGCCAGTGTCACCGGCGCATCTTCGTCTCGACGGCGGACGGCCGGCTGATCGCGCTCGATGCGGTCGCCGGCTTCGTTTG CCGGGAGTTCGGCGAAGACGGCGTCGTCGATTTGACCGCCGGCATGGGACTGCGCGAGAAGGGCTTCGCCTCCTCCACCT CGGGCGCGACCATGGCGGGCGGGCTGCTCATTCTGGGCCATCAGGTGAGCGACAACCAGAGACGGGATGCGCCGTCCGGC GTGGTGCGAGCCTATGACGCGCGCACCGGCGAACTCCGCTGGGCCGTGGACGCACTTCGTCCCGACGCCCAGGCCAAGCT CGCGCCCGGCGAGATCTATCCCCGCGGCACGCCGAACGTCTGGAACATCATTTCGGCGGACGAATCATTGGGGCTGGCCT TCCTCGCCACCGGCAATGCCGCCGCCGATCAATGGGGTGGCAACCGGACCCCGGAAGAAGACCGCTTCACCGATGCTGTC GTCGCGGTCGATCTGCAGACCGGCGCGACGCGCTGGGTCTACACCACCGTCACCCACGACCTTTGGGACTACGACCTCGG CGCTCAGCCGATGCTGGTCGACGTCACCATCAACGGCTCTGCCCATCGAGCCATCATGCAGGCCAGCAAGACCGGCAACC TGTTTCTGCTGGACGCCCGCACCGGCGAGCCGCTCCGCCCGGTCGAGCAGCGCCCTACCCCGCAGGGCCCGCCTCCGGGC GATTGGGTGGCGCCGACCCAGCCGCAATCCGTCTTCTTTCCGAACATCGGTGGCGTGCCGGGTCGCGATCCCGAGCAAAT CGACGCGCGTCATGCCTTCGGGCTGACGCCGATCGACGCTGCGCTCTGCCGCATCAGTTTCCACCGTCACCGCTACGAGG GCATCTTCACCCCGCCCACGGTCGACAAGGCAGGCCTGCTGCTGTTTCCGGGCACGGTCGGTGGCATGAATTGGGGCGGG CTCGGCTACGACCCGCAGCGTCGCCTGATCATCGCCAACAATTCCCGGCTGCCCAACCTGGTGGTTCTGCATCCGCGCGC GGACGTCGTCGATCAGCCTGTCGGATCGGGCGGCGCCAGACCGGATCAGAAAGTCGCCCCCCACTCCGGGACGCCCTTCG CCGTGACCCGACCGATCTGGTGGTCGCCGCTCAGGGTGCCGTGCATCTCGCCGCCCTGGGGCTACATCTCGGCGACCAAT ATCGACACCGGCCAGATCGTCTGGTCGAAGCCCTTGGGCACCGGCTTCGATTCCGGTCCGCTCGGTATTCCCACCCGTCT CAAGATCGCGACGGGAACGCCGAACCTCGGCGGCCCGCTGGTGACGGCCGGCGGCTTGACCTTCATCGGCGCGACGCAGG ACGATTTCCTGCGCGCGTTCGAGACCGCCACCGGACGGCTGCTGTGGGAAGCCCGGCTGCCCGCCGGCGCGCAGGCCGGC CCGATGAGCTACGCGCACAACGGTCGGCAATACATCGCGGTCACGGCGACCGGTCACGCCCGCTTCGGCACCACGCCCGG CGATTATCTCAAGGTCTACGCCCTGCCCCAATAG
Upstream 100 bases:
>100_bases GGCGCATGCGCCGATGGGTCGCCGAGGTGCCTATCAGCTGGATGGAACACTGCCGTAGGCGGAACGTTGGCCGGGCAGCC CCGCTGACGGAGATCTGCTC
Downstream 100 bases:
>100_bases CGGCCGGCGCAAGTCAGTCCGCAGCCGCCTCGGAACGTCGGCCCGAGCAGCGCGGCCGATATCCCGCCTGCAACGCACGC AACGTCGAGGGCGGCGTTAT
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: NAD(P)-independent quinate dehydrogenase [H]
Number of amino acids: Translated: 837; Mature: 836
Protein sequence:
>837_residues MPADTTHPRFAKRRGWRWLYVGLATLVGVLGLIMAVLGGWLIALGGSFYYLGAGALLALGAALVWTGRDRAAFLLFAGAF LLTIIWSLVEIAGKGWLPAWGIDFAGRVGVLAALLAGVGLAYLLWRAAPRSTPRKLALASALSIFIALGGLVYASWETTE PASERDSAASGAPAGGGAMQEAGADWTAFGGTTGGRRYSSLSQVSTANVTTLQEAWTFRSGDLNPDPGRVFYSAQNTPIK VGDLLYTCTPTNRVFALDPGTGNVRWSHDPKVPASAMESLFTAACRAVAYFDDGEAAGAPESIATMPAVPGAIRPVPRGG SQCHRRIFVSTADGRLIALDAVAGFVCREFGEDGVVDLTAGMGLREKGFASSTSGATMAGGLLILGHQVSDNQRRDAPSG VVRAYDARTGELRWAVDALRPDAQAKLAPGEIYPRGTPNVWNIISADESLGLAFLATGNAAADQWGGNRTPEEDRFTDAV VAVDLQTGATRWVYTTVTHDLWDYDLGAQPMLVDVTINGSAHRAIMQASKTGNLFLLDARTGEPLRPVEQRPTPQGPPPG DWVAPTQPQSVFFPNIGGVPGRDPEQIDARHAFGLTPIDAALCRISFHRHRYEGIFTPPTVDKAGLLLFPGTVGGMNWGG LGYDPQRRLIIANNSRLPNLVVLHPRADVVDQPVGSGGARPDQKVAPHSGTPFAVTRPIWWSPLRVPCISPPWGYISATN IDTGQIVWSKPLGTGFDSGPLGIPTRLKIATGTPNLGGPLVTAGGLTFIGATQDDFLRAFETATGRLLWEARLPAGAQAG PMSYAHNGRQYIAVTATGHARFGTTPGDYLKVYALPQ
Sequences:
>Translated_837_residues MPADTTHPRFAKRRGWRWLYVGLATLVGVLGLIMAVLGGWLIALGGSFYYLGAGALLALGAALVWTGRDRAAFLLFAGAF LLTIIWSLVEIAGKGWLPAWGIDFAGRVGVLAALLAGVGLAYLLWRAAPRSTPRKLALASALSIFIALGGLVYASWETTE PASERDSAASGAPAGGGAMQEAGADWTAFGGTTGGRRYSSLSQVSTANVTTLQEAWTFRSGDLNPDPGRVFYSAQNTPIK VGDLLYTCTPTNRVFALDPGTGNVRWSHDPKVPASAMESLFTAACRAVAYFDDGEAAGAPESIATMPAVPGAIRPVPRGG SQCHRRIFVSTADGRLIALDAVAGFVCREFGEDGVVDLTAGMGLREKGFASSTSGATMAGGLLILGHQVSDNQRRDAPSG VVRAYDARTGELRWAVDALRPDAQAKLAPGEIYPRGTPNVWNIISADESLGLAFLATGNAAADQWGGNRTPEEDRFTDAV VAVDLQTGATRWVYTTVTHDLWDYDLGAQPMLVDVTINGSAHRAIMQASKTGNLFLLDARTGEPLRPVEQRPTPQGPPPG DWVAPTQPQSVFFPNIGGVPGRDPEQIDARHAFGLTPIDAALCRISFHRHRYEGIFTPPTVDKAGLLLFPGTVGGMNWGG LGYDPQRRLIIANNSRLPNLVVLHPRADVVDQPVGSGGARPDQKVAPHSGTPFAVTRPIWWSPLRVPCISPPWGYISATN IDTGQIVWSKPLGTGFDSGPLGIPTRLKIATGTPNLGGPLVTAGGLTFIGATQDDFLRAFETATGRLLWEARLPAGAQAG PMSYAHNGRQYIAVTATGHARFGTTPGDYLKVYALPQ >Mature_836_residues PADTTHPRFAKRRGWRWLYVGLATLVGVLGLIMAVLGGWLIALGGSFYYLGAGALLALGAALVWTGRDRAAFLLFAGAFL LTIIWSLVEIAGKGWLPAWGIDFAGRVGVLAALLAGVGLAYLLWRAAPRSTPRKLALASALSIFIALGGLVYASWETTEP ASERDSAASGAPAGGGAMQEAGADWTAFGGTTGGRRYSSLSQVSTANVTTLQEAWTFRSGDLNPDPGRVFYSAQNTPIKV GDLLYTCTPTNRVFALDPGTGNVRWSHDPKVPASAMESLFTAACRAVAYFDDGEAAGAPESIATMPAVPGAIRPVPRGGS QCHRRIFVSTADGRLIALDAVAGFVCREFGEDGVVDLTAGMGLREKGFASSTSGATMAGGLLILGHQVSDNQRRDAPSGV VRAYDARTGELRWAVDALRPDAQAKLAPGEIYPRGTPNVWNIISADESLGLAFLATGNAAADQWGGNRTPEEDRFTDAVV AVDLQTGATRWVYTTVTHDLWDYDLGAQPMLVDVTINGSAHRAIMQASKTGNLFLLDARTGEPLRPVEQRPTPQGPPPGD WVAPTQPQSVFFPNIGGVPGRDPEQIDARHAFGLTPIDAALCRISFHRHRYEGIFTPPTVDKAGLLLFPGTVGGMNWGGL GYDPQRRLIIANNSRLPNLVVLHPRADVVDQPVGSGGARPDQKVAPHSGTPFAVTRPIWWSPLRVPCISPPWGYISATNI DTGQIVWSKPLGTGFDSGPLGIPTRLKIATGTPNLGGPLVTAGGLTFIGATQDDFLRAFETATGRLLWEARLPAGAQAGP MSYAHNGRQYIAVTATGHARFGTTPGDYLKVYALPQ
Specific function: Can act either on quinate or on shikimate [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=830, Percent_Identity=38.1927710843374, Blast_Score=520, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.99.25 [H]
Molecular weight: Translated: 88612; Mature: 88480
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPADTTHPRFAKRRGWRWLYVGLATLVGVLGLIMAVLGGWLIALGGSFYYLGAGALLALG CCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHC AALVWTGRDRAAFLLFAGAFLLTIIWSLVEIAGKGWLPAWGIDFAGRVGVLAALLAGVGL HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLLWRAAPRSTPRKLALASALSIFIALGGLVYASWETTEPASERDSAASGAPAGGGAMQ HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH EAGADWTAFGGTTGGRRYSSLSQVSTANVTTLQEAWTFRSGDLNPDPGRVFYSAQNTPIK HCCCCEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCCCEE VGDLLYTCTPTNRVFALDPGTGNVRWSHDPKVPASAMESLFTAACRAVAYFDDGEAAGAP ECCEEEEECCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCC ESIATMPAVPGAIRPVPRGGSQCHRRIFVSTADGRLIALDAVAGFVCREFGEDGVVDLTA HHHHHCCCCCCCCCCCCCCCHHHCEEEEEEECCCCEEEHHHHHHHHHHHHCCCCEEEEEC GMGLREKGFASSTSGATMAGGLLILGHQVSDNQRRDAPSGVVRAYDARTGELRWAVDALR CCCCCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEHHHHC PDAQAKLAPGEIYPRGTPNVWNIISADESLGLAFLATGNAAADQWGGNRTPEEDRFTDAV CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHCCCCCCCCHHCCCEEE VAVDLQTGATRWVYTTVTHDLWDYDLGAQPMLVDVTINGSAHRAIMQASKTGNLFLLDAR EEEEECCCCCEEEEEEEEHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECC TGEPLRPVEQRPTPQGPPPGDWVAPTQPQSVFFPNIGGVPGRDPEQIDARHAFGLTPIDA CCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHCCCCHHHH ALCRISFHRHRYEGIFTPPTVDKAGLLLFPGTVGGMNWGGLGYDPQRRLIIANNSRLPNL HHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEE VVLHPRADVVDQPVGSGGARPDQKVAPHSGTPFAVTRPIWWSPLRVPCISPPWGYISATN EEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCEEECC IDTGQIVWSKPLGTGFDSGPLGIPTRLKIATGTPNLGGPLVTAGGLTFIGATQDDFLRAF CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCEEEEECCHHHHHHHH ETATGRLLWEARLPAGAQAGPMSYAHNGRQYIAVTATGHARFGTTPGDYLKVYALPQ HHHCCEEEEEECCCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECC >Mature Secondary Structure PADTTHPRFAKRRGWRWLYVGLATLVGVLGLIMAVLGGWLIALGGSFYYLGAGALLALG CCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHC AALVWTGRDRAAFLLFAGAFLLTIIWSLVEIAGKGWLPAWGIDFAGRVGVLAALLAGVGL HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLLWRAAPRSTPRKLALASALSIFIALGGLVYASWETTEPASERDSAASGAPAGGGAMQ HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH EAGADWTAFGGTTGGRRYSSLSQVSTANVTTLQEAWTFRSGDLNPDPGRVFYSAQNTPIK HCCCCEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCEEEEECCCCCEE VGDLLYTCTPTNRVFALDPGTGNVRWSHDPKVPASAMESLFTAACRAVAYFDDGEAAGAP ECCEEEEECCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCC ESIATMPAVPGAIRPVPRGGSQCHRRIFVSTADGRLIALDAVAGFVCREFGEDGVVDLTA HHHHHCCCCCCCCCCCCCCCHHHCEEEEEEECCCCEEEHHHHHHHHHHHHCCCCEEEEEC GMGLREKGFASSTSGATMAGGLLILGHQVSDNQRRDAPSGVVRAYDARTGELRWAVDALR CCCCCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEHHHHC PDAQAKLAPGEIYPRGTPNVWNIISADESLGLAFLATGNAAADQWGGNRTPEEDRFTDAV CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHCCCCCCCCHHCCCEEE VAVDLQTGATRWVYTTVTHDLWDYDLGAQPMLVDVTINGSAHRAIMQASKTGNLFLLDAR EEEEECCCCCEEEEEEEEHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECC TGEPLRPVEQRPTPQGPPPGDWVAPTQPQSVFFPNIGGVPGRDPEQIDARHAFGLTPIDA CCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCHHHHCCCCHHHH ALCRISFHRHRYEGIFTPPTVDKAGLLLFPGTVGGMNWGGLGYDPQRRLIIANNSRLPNL HHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEE VVLHPRADVVDQPVGSGGARPDQKVAPHSGTPFAVTRPIWWSPLRVPCISPPWGYISATN EEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCEEECC IDTGQIVWSKPLGTGFDSGPLGIPTRLKIATGTPNLGGPLVTAGGLTFIGATQDDFLRAF CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCEEEEECCHHHHHHHH ETATGRLLWEARLPAGAQAGPMSYAHNGRQYIAVTATGHARFGTTPGDYLKVYALPQ HHHCCEEEEEECCCCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002591; 7592351 [H]