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The map label for this gene is 86750235

Identifier: 86750235

GI number: 86750235

Start: 3558100

End: 3558465

Strand: Direct

Name: 86750235

Synonym: RPB_3124

Alternate gene names: NA

Gene position: 3558100-3558465 (Clockwise)

Preceding gene: 86750234

Following gene: 86750250

Centisome position: 66.74

GC content: 65.03

Gene sequence:

>366_bases
ATGCCAGACTACAAGGAAGCTGTGGCCACGCTGCAGCAGCAACTCGACAGCGCCAAACAAGCGCTGCCACGCGATGTCGC
GGCCGCAGTGGCGACCCGGGATTGGAGCGATGTGCTGAGAGATCGGTTCGACGTAGAGGCGCTGATCGAGCATCTCGATC
AACAGGTCAAAGACAGCGCCTTCATCAAGCAACTGCAAGCCGCTGCGGACAAGGAGCGCTCGCAGCAGCGACAGCGCGGC
CGGCCGCGCAAGCAAGCCGACGCAAGGGCTGAGCCGACCGCACCGTCCAAGCCGCTGCAGAACTTCATCCGCAGGGCGGT
CCCCAAGCCGGCCACCGAGCCGACAAACGCCACGACCGCCAGCTAG

Upstream 100 bases:

>100_bases
CGGCAGTCAGCAAGTCGCAAGTGTTGATTCATGCAGCCCGAGACCCGACATTTCCTGTGCGGGCAGCCCGCCCGCGTACG
GAGCAGGAAAGGATCTCGTC

Downstream 100 bases:

>100_bases
GCCTGCCGCTCCTCGGAGGTTGCGGAAAAACGTGTACTGATGTATCAATGATACATCCCTCTGGCGCAATATAGATCAGC
CAAGGCCTGCAATTTCGGGA

Product: HMG-I and HMG-Y, DNA-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MPDYKEAVATLQQQLDSAKQALPRDVAAAVATRDWSDVLRDRFDVEALIEHLDQQVKDSAFIKQLQAAADKERSQQRQRG
RPRKQADARAEPTAPSKPLQNFIRRAVPKPATEPTNATTAS

Sequences:

>Translated_121_residues
MPDYKEAVATLQQQLDSAKQALPRDVAAAVATRDWSDVLRDRFDVEALIEHLDQQVKDSAFIKQLQAAADKERSQQRQRG
RPRKQADARAEPTAPSKPLQNFIRRAVPKPATEPTNATTAS
>Mature_120_residues
PDYKEAVATLQQQLDSAKQALPRDVAAAVATRDWSDVLRDRFDVEALIEHLDQQVKDSAFIKQLQAAADKERSQQRQRGR
PRKQADARAEPTAPSKPLQNFIRRAVPKPATEPTNATTAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13504; Mature: 13373

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYKEAVATLQQQLDSAKQALPRDVAAAVATRDWSDVLRDRFDVEALIEHLDQQVKDSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHH
FIKQLQAAADKERSQQRQRGRPRKQADARAEPTAPSKPLQNFIRRAVPKPATEPTNATTA
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
S
C
>Mature Secondary Structure 
PDYKEAVATLQQQLDSAKQALPRDVAAAVATRDWSDVLRDRFDVEALIEHLDQQVKDSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHH
FIKQLQAAADKERSQQRQRGRPRKQADARAEPTAPSKPLQNFIRRAVPKPATEPTNATTA
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA