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The map label for this gene is 86750176

Identifier: 86750176

GI number: 86750176

Start: 3491923

End: 3492492

Strand: Direct

Name: 86750176

Synonym: RPB_3060

Alternate gene names: NA

Gene position: 3491923-3492492 (Clockwise)

Preceding gene: 86750175

Following gene: 86750177

Centisome position: 65.49

GC content: 62.81

Gene sequence:

>570_bases
ATGTCCCACAAGCTTGCGGGCGAATTCATCGACCGCATCATCGCGCTGCGTCCCGTCTTGCTTCGGCATGCCGCTTTCCT
GATCGGGAGTCGTGCCGACATTGGATCGCCGGAGGATTTTGTCCAGGACACTCTGGTCACTGCCTTCCAGCACGGCAATC
GCTTCGACGATGGAAGTCTATCGGGATGGCTGACTGCGATCCTGCGCAATCACATCAGCAATGCGCGTCGACGAGCTAAC
CGGCGCAACTTGGTCCTGGAGCCTCTGGACGCAACCGGCGGCGGCGCGGGGATGAACGACTTTCCCGTCGTCGCAACGCA
GGGACTTGCACTCGACCTCGAGGACGCCATGGCCGCGCTGAGTACGCTGTCGTCCATCGATCAGGAAATCATCTGGCTGG
CCCGGGTCGACGGCTTATCGCCCGAGGAAATCGGGGCGCGTCTTGGATTGGCCGCGGGCAGCGTCTACTCGCGCCTTTCG
CGTGCAACGACCAAGCTCCGCGCCACGTATGACGCACCTCCGGCCGCATCCCTGATGCGGCCGCGCGTTCCTTTTCGTCA
TGCGGCTTGA

Upstream 100 bases:

>100_bases
TGAACCGGAGAGCAAACGGCCCGTCCACAAAATAGGAAAAAGATCCTCGACAAGAAGCCGGGATCCTGCCAGGTTGCCGT
CGTCACGAGAGGAGCCATCC

Downstream 100 bases:

>100_bases
GGATGCCGTGATGCCCCTGAGAGTTCATCTGGTCGCCGGCTTCAACGGCGGCTCGGGCCGCACCCTGACGGCGGCGTTGC
TGGCGTACGGATTCCATCTT

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQHGNRFDDGSLSGWLTAILRNHISNARRRAN
RRNLVLEPLDATGGGAGMNDFPVVATQGLALDLEDAMAALSTLSSIDQEIIWLARVDGLSPEEIGARLGLAAGSVYSRLS
RATTKLRATYDAPPAASLMRPRVPFRHAA

Sequences:

>Translated_189_residues
MSHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQHGNRFDDGSLSGWLTAILRNHISNARRRAN
RRNLVLEPLDATGGGAGMNDFPVVATQGLALDLEDAMAALSTLSSIDQEIIWLARVDGLSPEEIGARLGLAAGSVYSRLS
RATTKLRATYDAPPAASLMRPRVPFRHAA
>Mature_188_residues
SHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQHGNRFDDGSLSGWLTAILRNHISNARRRANR
RNLVLEPLDATGGGAGMNDFPVVATQGLALDLEDAMAALSTLSSIDQEIIWLARVDGLSPEEIGARLGLAAGSVYSRLSR
ATTKLRATYDAPPAASLMRPRVPFRHAA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20410; Mature: 20278

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQHGNRFDDGSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
SGWLTAILRNHISNARRRANRRNLVLEPLDATGGGAGMNDFPVVATQGLALDLEDAMAAL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEECCCCEECHHHHHHHH
STLSSIDQEIIWLARVDGLSPEEIGARLGLAAGSVYSRLSRATTKLRATYDAPPAASLMR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHC
PRVPFRHAA
CCCCCCCCC
>Mature Secondary Structure 
SHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQHGNRFDDGSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
SGWLTAILRNHISNARRRANRRNLVLEPLDATGGGAGMNDFPVVATQGLALDLEDAMAAL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEECCCCEECHHHHHHHH
STLSSIDQEIIWLARVDGLSPEEIGARLGLAAGSVYSRLSRATTKLRATYDAPPAASLMR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHC
PRVPFRHAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA