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The map label for this gene is yebA [H]

Identifier: 86750120

GI number: 86750120

Start: 3420507

End: 3421880

Strand: Direct

Name: yebA [H]

Synonym: RPB_3003

Alternate gene names: 86750120

Gene position: 3420507-3421880 (Clockwise)

Preceding gene: 86750119

Following gene: 86750126

Centisome position: 64.15

GC content: 69.43

Gene sequence:

>1374_bases
ATGCCCTACCGTTCTGGCCACCATTCCGACCATCCGCAGCACCACGCACCGCATCACGGCCGCCAAGCGCCGTACCGGGC
TCGCCGCCCGCAGCCGGGGCCTCAGCCTCAGATCGCAGCGGAGGCCTCGAGCTACACCTTCGCTCACGCCGGCCGGCAGG
TGCGGATCGGGCCCGTGCTGTTCTGGATCGTCGTCGGCACCATCGTCGCGCTCGGCTGCTGGTCTGCCGCCACCGCCACC
TATTTCGCGTTCCGCGACGACGTCCTGACCCGGCTGATCGCCCGCCAGGCCGAGATGCAATACGCCTACGAGGACCGCAT
CGCCGAGCTGCGCGCCAAGGTCGACCGCACCACCAGCCGGCAGTTACTCGATCAGGAGCAGTTCGACCAGAAGCTCGACC
AGGTGATGCGCCGCCAGACCATGCTGGAATCGCGCGCCAGCGCGATGAGCACCCTGCCCGACGTCGCCGTCACCGGCAGC
ATCAAGAGTTCACGGACGCCCGCACCGGACAGCACGCCCGCCGGCCCGCTGAAGCCGTCGCCGATCAACGACACGGTGAT
CTTCGTCGCTCCGCCGGATCGTGAAGCGCGGCTGGAATCACGCTCCCCCGCTGCAGCGCCGTCGCTGCCGACGACGCAAT
ACGCCAAGGCCCAGGGCCTCGACACCGCGCTGACGAAACTCGAGCAGTCGCTCGACCAGGTCGAGAAGCGGCAGATCGCA
ACGCTCGGCTCGGTCGAGGAAAGTTTCGAGTCCCGCGCGCGCCGGATGCGCGGCGTGCTGGCCGATCTCGGCCTCGCCGC
CCGCGGTCTGGAAGCCGCGGCGCCCCGGGCCGGCGTCGGCGGTCCGTTCGTGCCGCTGAAAGCGCCGTCTGCCAATGCCA
GCGCGTTCGACCGCCAGCTCTATCGGATCAATCTCAGCCGATCGCAGCTCGACCGCCTCAACCGCGCGCTGACGCTGGTG
CCGTATCGCAAGCCGGTGGTCGGCGAGGTCGAATTCTCCTCGGGCTTCGGCGTCCGCACCGATCCGTTTCTCGGCCGTCC
GGCCATGCACACCGGCCTCGATTTCCGCGGCAACAGCGGCGACCCGGTCCGCGCCACGGCGATCGGCAAGGTGGTCAACG
CGGGCTGGCAGGGCGGCTACGGCCAGATGGTCGAGATCGACCACGGCAACGGCCTGTCGACGCGCTACGGCCATCTGTCG
AAGATCATCGCCAAGGTCGGCCAGAGCGTCCAGATCGGCCAGATGATCGGCGAGATCGGCTCCACCGGCCGCTCCACCGG
CCCGCATCTGCACTACGAAACGCGCATCGACGGTGAAGCGGTCGACCCGCAGAAGTTTCTGCGCGCGGGGGTGCGGCTGG
CGGGGGCGGGTTAG

Upstream 100 bases:

>100_bases
CAATTGCTGTGACTGCGTTCTCCGAAAATTAACCATGAGGGGGTCAAATCTGCCCGCGCATTGAGCCGACGACCTGTATC
CGTCCGGCGCGGGAGTATCG

Downstream 100 bases:

>100_bases
GATCGCTCGGTCCGCCACCGGCGCGCTTCGATCCATGCCAAGGCTCGGCCGTCGATGATAAGAAGCGCGCTGGCAATCAT
GCTGCCGCCCATCAGTTCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MPYRSGHHSDHPQHHAPHHGRQAPYRARRPQPGPQPQIAAEASSYTFAHAGRQVRIGPVLFWIVVGTIVALGCWSAATAT
YFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLDQVMRRQTMLESRASAMSTLPDVAVTGS
IKSSRTPAPDSTPAGPLKPSPINDTVIFVAPPDREARLESRSPAAAPSLPTTQYAKAQGLDTALTKLEQSLDQVEKRQIA
TLGSVEESFESRARRMRGVLADLGLAARGLEAAAPRAGVGGPFVPLKAPSANASAFDRQLYRINLSRSQLDRLNRALTLV
PYRKPVVGEVEFSSGFGVRTDPFLGRPAMHTGLDFRGNSGDPVRATAIGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLS
KIIAKVGQSVQIGQMIGEIGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG

Sequences:

>Translated_457_residues
MPYRSGHHSDHPQHHAPHHGRQAPYRARRPQPGPQPQIAAEASSYTFAHAGRQVRIGPVLFWIVVGTIVALGCWSAATAT
YFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLDQVMRRQTMLESRASAMSTLPDVAVTGS
IKSSRTPAPDSTPAGPLKPSPINDTVIFVAPPDREARLESRSPAAAPSLPTTQYAKAQGLDTALTKLEQSLDQVEKRQIA
TLGSVEESFESRARRMRGVLADLGLAARGLEAAAPRAGVGGPFVPLKAPSANASAFDRQLYRINLSRSQLDRLNRALTLV
PYRKPVVGEVEFSSGFGVRTDPFLGRPAMHTGLDFRGNSGDPVRATAIGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLS
KIIAKVGQSVQIGQMIGEIGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
>Mature_456_residues
PYRSGHHSDHPQHHAPHHGRQAPYRARRPQPGPQPQIAAEASSYTFAHAGRQVRIGPVLFWIVVGTIVALGCWSAATATY
FAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLDQVMRRQTMLESRASAMSTLPDVAVTGSI
KSSRTPAPDSTPAGPLKPSPINDTVIFVAPPDREARLESRSPAAAPSLPTTQYAKAQGLDTALTKLEQSLDQVEKRQIAT
LGSVEESFESRARRMRGVLADLGLAARGLEAAAPRAGVGGPFVPLKAPSANASAFDRQLYRINLSRSQLDRLNRALTLVP
YRKPVVGEVEFSSGFGVRTDPFLGRPAMHTGLDFRGNSGDPVRATAIGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSK
IIAKVGQSVQIGQMIGEIGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=47.5409836065574, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=38.5416666666667, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789099, Length=127, Percent_Identity=33.0708661417323, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=36.3636363636364, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49575; Mature: 49444

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYRSGHHSDHPQHHAPHHGRQAPYRARRPQPGPQPQIAAEASSYTFAHAGRQVRIGPVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEHHHCCCEEEEHHHH
FWIVVGTIVALGCWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLDQEQFDQKLDQVMRRQTMLESRASAMSTLPDVAVTGSIKSSRTPAPDSTPAGPLKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PINDTVIFVAPPDREARLESRSPAAAPSLPTTQYAKAQGLDTALTKLEQSLDQVEKRQIA
CCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TLGSVEESFESRARRMRGVLADLGLAARGLEAAAPRAGVGGPFVPLKAPSANASAFDRQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCH
YRINLSRSQLDRLNRALTLVPYRKPVVGEVEFSSGFGVRTDPFLGRPAMHTGLDFRGNSG
HEEECCHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCC
DPVRATAIGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKIIAKVGQSVQIGQMIGEIG
CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
STGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
CCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PYRSGHHSDHPQHHAPHHGRQAPYRARRPQPGPQPQIAAEASSYTFAHAGRQVRIGPVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEHHHCCCEEEEHHHH
FWIVVGTIVALGCWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLDQEQFDQKLDQVMRRQTMLESRASAMSTLPDVAVTGSIKSSRTPAPDSTPAGPLKPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PINDTVIFVAPPDREARLESRSPAAAPSLPTTQYAKAQGLDTALTKLEQSLDQVEKRQIA
CCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TLGSVEESFESRARRMRGVLADLGLAARGLEAAAPRAGVGGPFVPLKAPSANASAFDRQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCH
YRINLSRSQLDRLNRALTLVPYRKPVVGEVEFSSGFGVRTDPFLGRPAMHTGLDFRGNSG
HEEECCHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCC
DPVRATAIGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKIIAKVGQSVQIGQMIGEIG
CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
STGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
CCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]