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The map label for this gene is ybgK [H]

Identifier: 86749950

GI number: 86749950

Start: 3226598

End: 3227605

Strand: Direct

Name: ybgK [H]

Synonym: RPB_2833

Alternate gene names: 86749950

Gene position: 3226598-3227605 (Clockwise)

Preceding gene: 86749949

Following gene: 86749951

Centisome position: 60.52

GC content: 69.15

Gene sequence:

>1008_bases
ATGAGCAAGCTTCTAATCGACAATGTCGGCCCGGCGACCTCCGTGCAGGACGCGGGACGCCACGGCGCGCAGCGCTACGG
TCTGACGCCGAGCGGCGCGATGGATCGTCTGTCGCTGGCTGCCGCGAACGTGCTGGTCGGCAACGATGCGTTCGCCGCCG
CGGTCGAATTGGGGCCGCTCGGCGCAACGCTCACCGCGCACGACGGCGCGGTGCGGCTGGCCCTGACAGGCGCGGAGCGC
TCCGCCACGATCGGCGACCGCGCGATCGCACTCAACGAGTCCTTCCTGCTCGCCGACGGCGAGACATTGACGCTCGGAAT
CGCGCGCAGCCAGGTGTTCAGCTATCTGGCGATCGCTGGCGGCATCGATGGCGAGCCGATGTTCGGCAGTCTCGCGGTCA
ATGCCCGCGCCGGCCTCGGCAGTCCCTACCCGCGGCCGCTGCAATCCGGCGACGCCATCCCGGCCGCGTCGGCAGTCGTT
GCGCCCGAACGTCGCCTCGATCTGCCGACACCGCCCGACGGGCCGATCCGCGTCGTGCTCGGCCCGCAGGACGACGAATT
CGGCGATGCCGTCGCGACCTTCCTCGACAGCGCGTGGAAAGTGTCGGCGACCAGCGACCGGATGGGCTATCGCCTCGAAG
GTCCGGAGATCCGCCATCTGCACGGCCACAACATCGTCTCCGACGGCACTGTCGACGGCAGCATCCAGGTTCCCGGCAAT
GGCCAGCCGATCGTGCTGATGCCCGATCGCGGCACCAGCGGCGGCTATCCGAAAATTGCCACCGTGATCACCGCCGATCT
CGGTCGGCTCGCGCAGCTTCAGCCCGGGCGGCCGTTTCGTTTCAGATCGGTGAGCATGGAGGAGGCGCAGGCCGAATATC
GCGCAATGGCCGGGCTGATCCGCGCCCTGCCCGACCGGATCGCGGACGCGCAGCATATGACGCTCGACCTCGACGCGCTG
CTGACGGCCAACGTGGCGGGCGCGGCCACCAACGCGCTCGAAATCTGA

Upstream 100 bases:

>100_bases
CGGGCGATACGATCAGCTTCAGCCGGATCGACGCCAAGGAATTCGCCGAACAGGATCGCGCCGCCGAACACGGCGAAGTC
GTCGCCGAGTTGTCGGCGTC

Downstream 100 bases:

>100_bases
GATCGTTTCAAGAGGATGTGAGATGAAGATCGATCTGAACTGCGACCTTGGTGAAGGTTTCGGCGCATGGAGCATGGGCG
ACGACGCGGCAATGATGCGC

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSKLLIDNVGPATSVQDAGRHGAQRYGLTPSGAMDRLSLAAANVLVGNDAFAAAVELGPLGATLTAHDGAVRLALTGAER
SATIGDRAIALNESFLLADGETLTLGIARSQVFSYLAIAGGIDGEPMFGSLAVNARAGLGSPYPRPLQSGDAIPAASAVV
APERRLDLPTPPDGPIRVVLGPQDDEFGDAVATFLDSAWKVSATSDRMGYRLEGPEIRHLHGHNIVSDGTVDGSIQVPGN
GQPIVLMPDRGTSGGYPKIATVITADLGRLAQLQPGRPFRFRSVSMEEAQAEYRAMAGLIRALPDRIADAQHMTLDLDAL
LTANVAGAATNALEI

Sequences:

>Translated_335_residues
MSKLLIDNVGPATSVQDAGRHGAQRYGLTPSGAMDRLSLAAANVLVGNDAFAAAVELGPLGATLTAHDGAVRLALTGAER
SATIGDRAIALNESFLLADGETLTLGIARSQVFSYLAIAGGIDGEPMFGSLAVNARAGLGSPYPRPLQSGDAIPAASAVV
APERRLDLPTPPDGPIRVVLGPQDDEFGDAVATFLDSAWKVSATSDRMGYRLEGPEIRHLHGHNIVSDGTVDGSIQVPGN
GQPIVLMPDRGTSGGYPKIATVITADLGRLAQLQPGRPFRFRSVSMEEAQAEYRAMAGLIRALPDRIADAQHMTLDLDAL
LTANVAGAATNALEI
>Mature_334_residues
SKLLIDNVGPATSVQDAGRHGAQRYGLTPSGAMDRLSLAAANVLVGNDAFAAAVELGPLGATLTAHDGAVRLALTGAERS
ATIGDRAIALNESFLLADGETLTLGIARSQVFSYLAIAGGIDGEPMFGSLAVNARAGLGSPYPRPLQSGDAIPAASAVVA
PERRLDLPTPPDGPIRVVLGPQDDEFGDAVATFLDSAWKVSATSDRMGYRLEGPEIRHLHGHNIVSDGTVDGSIQVPGNG
QPIVLMPDRGTSGGYPKIATVITADLGRLAQLQPGRPFRFRSVSMEEAQAEYRAMAGLIRALPDRIADAQHMTLDLDALL
TANVAGAATNALEI

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=288, Percent_Identity=39.9305555555556, Blast_Score=184, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6319685, Length=318, Percent_Identity=29.2452830188679, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 34714; Mature: 34582

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLLIDNVGPATSVQDAGRHGAQRYGLTPSGAMDRLSLAAANVLVGNDAFAAAVELGPL
CCCEEECCCCCCCCHHHHHHCCHHHCCCCCCCCHHHHHHHHEEEEECCCCEEEEEEECCC
GATLTAHDGAVRLALTGAERSATIGDRAIALNESFLLADGETLTLGIARSQVFSYLAIAG
CEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCEEEECCCEEEEEEHHHHHHHHHHHHC
GIDGEPMFGSLAVNARAGLGSPYPRPLQSGDAIPAASAVVAPERRLDLPTPPDGPIRVVL
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCEEEEE
GPQDDEFGDAVATFLDSAWKVSATSDRMGYRLEGPEIRHLHGHNIVSDGTVDGSIQVPGN
CCCCCCHHHHHHHHHHCCEEEEECCCCCCEEECCCCEEEECCCCEECCCCCCCEEEECCC
GQPIVLMPDRGTSGGYPKIATVITADLGRLAQLQPGRPFRFRSVSMEEAQAEYRAMAGLI
CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
RALPDRIADAQHMTLDLDALLTANVAGAATNALEI
HHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLLIDNVGPATSVQDAGRHGAQRYGLTPSGAMDRLSLAAANVLVGNDAFAAAVELGPL
CCEEECCCCCCCCHHHHHHCCHHHCCCCCCCCHHHHHHHHEEEEECCCCEEEEEEECCC
GATLTAHDGAVRLALTGAERSATIGDRAIALNESFLLADGETLTLGIARSQVFSYLAIAG
CEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCEEEECCCEEEEEEHHHHHHHHHHHHC
GIDGEPMFGSLAVNARAGLGSPYPRPLQSGDAIPAASAVVAPERRLDLPTPPDGPIRVVL
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCEEEEE
GPQDDEFGDAVATFLDSAWKVSATSDRMGYRLEGPEIRHLHGHNIVSDGTVDGSIQVPGN
CCCCCCHHHHHHHHHHCCEEEEECCCCCCEEECCCCEEEECCCCEECCCCCCCEEEECCC
GQPIVLMPDRGTSGGYPKIATVITADLGRLAQLQPGRPFRFRSVSMEEAQAEYRAMAGLI
CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
RALPDRIADAQHMTLDLDALLTANVAGAATNALEI
HHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]