| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86749713
Identifier: 86749713
GI number: 86749713
Start: 2976539
End: 2977069
Strand: Direct
Name: 86749713
Synonym: RPB_2595
Alternate gene names: NA
Gene position: 2976539-2977069 (Clockwise)
Preceding gene: 86749712
Following gene: 86749714
Centisome position: 55.83
GC content: 68.55
Gene sequence:
>531_bases ATGCCGCGGCGACGTGTTGGAATCGCGATGGCCGCCTATGCGGCCGTCGCGGCGATCGGCGGTCCGGCCGCGGCCCATGT CTCGCTGCAGCCCAACGAGGCGGTGTCGGGCGGTTACTTCCAGACGGCACTCAGCGTGCCGCATGGTTGCGACGGCACCG CCACGCGTGCGGTCCGGGTCAAGATCCCGGACGGCGTATTGTCGGTGAAGCCGCAGATGAAGCCGGGCTGGAGCATCGAG ATCAAGACCCGCAAGATCGAGGGCGAACAGCCGAAGCTGCACGGCAAGACCATCACCGAGACGGTCGACGAGGTGGCGTG GCGCGGCGGGCCGTTGCCCGACGCGTTCTACGACACCTTCGGCCTGGTGATGAAGCTGCCCGATGCGGCCGGAAAGACGT TGTCCTTCCCGGTGGTGCAGGAGTGCGAGAAGGGCGTGCATCGCTGGATCGAAATCCCGGCAGCCGGGCAGGCGCCCGAC GCGCTGAAGGAGCCGGCGCCGACGCTGCGGCTGAAGCCGAAGGCTCCGTGA
Upstream 100 bases:
>100_bases TCACGCTCGACGTCGCCGGCATCGGCGCCAAGGCGCCCGGCGACGCCGGCGGCAGCATGATGAAGATGGACCCGAAGAGC CATTCGGGGATGAAGCACTG
Downstream 100 bases:
>100_bases TCGGAGCTCCCGCCCGGTCGCGGCGCAATGCCGGGCGATGGCTGGCATGGGTGACGGCGCTCGCCGTCCTCATGCTGCCG TCGCTCGCGCACGCCCACGC
Product: nuclear export factor GLE1
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MPRRRVGIAMAAYAAVAAIGGPAAAHVSLQPNEAVSGGYFQTALSVPHGCDGTATRAVRVKIPDGVLSVKPQMKPGWSIE IKTRKIEGEQPKLHGKTITETVDEVAWRGGPLPDAFYDTFGLVMKLPDAAGKTLSFPVVQECEKGVHRWIEIPAAGQAPD ALKEPAPTLRLKPKAP
Sequences:
>Translated_176_residues MPRRRVGIAMAAYAAVAAIGGPAAAHVSLQPNEAVSGGYFQTALSVPHGCDGTATRAVRVKIPDGVLSVKPQMKPGWSIE IKTRKIEGEQPKLHGKTITETVDEVAWRGGPLPDAFYDTFGLVMKLPDAAGKTLSFPVVQECEKGVHRWIEIPAAGQAPD ALKEPAPTLRLKPKAP >Mature_175_residues PRRRVGIAMAAYAAVAAIGGPAAAHVSLQPNEAVSGGYFQTALSVPHGCDGTATRAVRVKIPDGVLSVKPQMKPGWSIEI KTRKIEGEQPKLHGKTITETVDEVAWRGGPLPDAFYDTFGLVMKLPDAAGKTLSFPVVQECEKGVHRWIEIPAAGQAPDA LKEPAPTLRLKPKAP
Specific function: Unknown
COG id: COG4549
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18694; Mature: 18563
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRRVGIAMAAYAAVAAIGGPAAAHVSLQPNEAVSGGYFQTALSVPHGCDGTATRAVRV CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHEECCCCCCCCCCEEEEEE KIPDGVLSVKPQMKPGWSIEIKTRKIEGEQPKLHGKTITETVDEVAWRGGPLPDAFYDTF ECCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH GLVMKLPDAAGKTLSFPVVQECEKGVHRWIEIPAAGQAPDALKEPAPTLRLKPKAP HHEEECCCCCCCEECCHHHHHHHHHHHHEEECCCCCCCCHHHHCCCCCEEECCCCC >Mature Secondary Structure PRRRVGIAMAAYAAVAAIGGPAAAHVSLQPNEAVSGGYFQTALSVPHGCDGTATRAVRV CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHEECCCCCCCCCCEEEEEE KIPDGVLSVKPQMKPGWSIEIKTRKIEGEQPKLHGKTITETVDEVAWRGGPLPDAFYDTF ECCCCEEECCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH GLVMKLPDAAGKTLSFPVVQECEKGVHRWIEIPAAGQAPDALKEPAPTLRLKPKAP HHEEECCCCCCCEECCHHHHHHHHHHHHEEECCCCCCCCHHHHCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA