Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 86749525

GI number: 86749525

Start: 2758715

End: 2759143

Strand: Reverse

Name: ycfF [C]

Synonym: RPB_2405

Alternate gene names: 86749525

Gene position: 2759143-2758715 (Counterclockwise)

Preceding gene: 86749526

Following gene: 86749524

Centisome position: 51.75

GC content: 64.8

Gene sequence:

>429_bases
ATGACCGCCTACGATCCCGAGAACATCTTCGCCAAGATCCTGCGCGGCGAGTTTCCCTGCCACAAGATCTACGAGGACGA
CCACGTCTTCGCCTTCCTCGACATCATGCCGCGCTCGCCCGGGCACACGCTGGTCATCCCGAAGGCGCCGGCGCGCAACA
TCCTCGATATTACCGCCGAAGACTTCGCCCATGTCGCGCGCGGCGCGCACAAGATCGCCCACGCCGCGATGAAAGCCTTC
AAGGCCGACGGCATCGTGGTGCAGCAGTTCAGCGAACCGGCCGCCGGCCAGGTCGTGTATCATCTGCACATGCACGTGAT
GCCGCGCCATGACGGCGTGCCGCTGCTGCCGCCGGCCACTAAGAAGGAAGACACCGCCGTCCTGGAAGGCCACGCCGAGA
AACTGAAGGCGGCTCTGGCGCAGGGTTAG

Upstream 100 bases:

>100_bases
ACCGAGGCCGGCCCGTTCCGCAAGAGCGACGCCGCCGATCCGGCTTGACCGGCTGGTTCGCCGCGGCGAAAGATGACGCG
AGCGAACAGCCGGAGCGCCC

Downstream 100 bases:

>100_bases
CCTCCCGCGATCCCGATAGCGAGTCGAGAAAAATGCTGACCCTGCTCAGTTTTCTGTTGGGACTTGTCGCTCTTGTCGTC
GGCGCAGAATTGCTGGTCCG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTAYDPENIFAKILRGEFPCHKIYEDDHVFAFLDIMPRSPGHTLVIPKAPARNILDITAEDFAHVARGAHKIAHAAMKAF
KADGIVVQQFSEPAAGQVVYHLHMHVMPRHDGVPLLPPATKKEDTAVLEGHAEKLKAALAQG

Sequences:

>Translated_142_residues
MTAYDPENIFAKILRGEFPCHKIYEDDHVFAFLDIMPRSPGHTLVIPKAPARNILDITAEDFAHVARGAHKIAHAAMKAF
KADGIVVQQFSEPAAGQVVYHLHMHVMPRHDGVPLLPPATKKEDTAVLEGHAEKLKAALAQG
>Mature_141_residues
TAYDPENIFAKILRGEFPCHKIYEDDHVFAFLDIMPRSPGHTLVIPKAPARNILDITAEDFAHVARGAHKIAHAAMKAFK
ADGIVVQQFSEPAAGQVVYHLHMHVMPRHDGVPLLPPATKKEDTAVLEGHAEKLKAALAQG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Escherichia coli, GI1787346, Length=114, Percent_Identity=38.5964912280702, Blast_Score=62, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320078, Length=107, Percent_Identity=38.3177570093458, Blast_Score=66, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=37.962962962963, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=37.962962962963, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 15587; Mature: 15456

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYDPENIFAKILRGEFPCHKIYEDDHVFAFLDIMPRSPGHTLVIPKAPARNILDITAE
CCCCCHHHHHHHHHHCCCCCHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCCEEECCHH
DFAHVARGAHKIAHAAMKAFKADGIVVQQFSEPAAGQVVYHLHMHVMPRHDGVPLLPPAT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
KKEDTAVLEGHAEKLKAALAQG
CCCCHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure 
TAYDPENIFAKILRGEFPCHKIYEDDHVFAFLDIMPRSPGHTLVIPKAPARNILDITAE
CCCCHHHHHHHHHHCCCCCHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCCEEECCHH
DFAHVARGAHKIAHAAMKAFKADGIVVQQFSEPAAGQVVYHLHMHVMPRHDGVPLLPPAT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
KKEDTAVLEGHAEKLKAALAQG
CCCCHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]