Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 86749515

GI number: 86749515

Start: 2748447

End: 2748845

Strand: Direct

Name: clpS [H]

Synonym: RPB_2395

Alternate gene names: 86749515

Gene position: 2748447-2748845 (Clockwise)

Preceding gene: 86749512

Following gene: 86749516

Centisome position: 51.55

GC content: 58.15

Gene sequence:

>399_bases
ATGCTGCAACGATTTTCATCTTTCGACTCCGTCCCCGCGTCCGTCGGGCTATCGTATCGTGCGACCCGCATGGCGGGCGA
CGGCGGCCGTGCCGGCAGCGGCAGCCCGACGACGTCGGTCATCACCAAGGTCAAGCCGAAGACCAAGCGGCCGAACCTGT
ATCGCGTTCTGATTCTGAACGACGACTACACGCCGATGGAATTCGTCGTTCATGTGCTGGAAAAGTTCTTCCAGATGGAT
ATCGAGGCCGCGACCAAGGTGATGTTGCACGTGCATCATCACGGTATCGGCGAGTGCGGCGTGTTCACTTACGAGATCGC
CGAGACGAAAGTGACGCAGGTGATGGACTTCGCGCGAAAGCACCAGCATCCCCTGCAATGCGTGATGGAAAAGAAATAG

Upstream 100 bases:

>100_bases
GCCGGGGTGGCGGACAGCCGGAGCTGAATCGTCGATCACATTTTGTGCGCGCTGCGGTTCCGGTAAAGATGAGTTCCCTG
GGGATTCGAATACCTGAGCC

Downstream 100 bases:

>100_bases
GCGGGGTGAGGTCGCCGAACCCGGAACGGCTCTTGCATCGTTTCTGCTAGCGGGTTTTCCCGGACTTGCTTGGTGTGCTG
CCCGACGGGGAAGGAACGGG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMD
IEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK

Sequences:

>Translated_132_residues
MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMD
IEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK
>Mature_132_residues
MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMD
IEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=56.1797752808989, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 14855; Mature: 14855

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILN
CCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCHHHHEEECCCCCCCCCEEEEEEEC
DDYTPMEFVVHVLEKFFQMDIEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHH
HQHPLQCVMEKK
CCCCHHHHCCCC
>Mature Secondary Structure
MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILN
CCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCCCCHHHHEEECCCCCCCCCEEEEEEEC
DDYTPMEFVVHVLEKFFQMDIEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHH
HQHPLQCVMEKK
CCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA