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The map label for this gene is ywhC [H]

Identifier: 86749368

GI number: 86749368

Start: 2594041

End: 2594712

Strand: Reverse

Name: ywhC [H]

Synonym: RPB_2248

Alternate gene names: 86749368

Gene position: 2594712-2594041 (Counterclockwise)

Preceding gene: 86749371

Following gene: 86749367

Centisome position: 48.67

GC content: 66.82

Gene sequence:

>672_bases
ATGTCGGACCCTCTTTCCACCATGATGCTGGTGATCTCGGTGTGGGCGCTGCCGCTCGTGATCGCGATCACCTTTCACGA
GGCGGCGCACGCTTACGTGGCGCGGGCCTGCGGCGACAACACCGCATGGATGCTCGGCCGCGTCACGCTCAATCCGATCA
AGCATATCGATCCGTTCGGGACGGTGCTGCTGCCACTGCTGCTGCTGGCGATCCAGTCGCCGTTCCTGTTCGGCTACGCC
AAGCCGGTGCCGGTGAATTTTCGGGGATTGCGCAACCCGCGGCGCGACATGATCCTGGTGGCAGCGGCCGGCCCCGCGAT
CAATCTCGCGCTGGCGCTGATCGCCGCGATCGCCATCCGCCTGATCGACCTGCCCGGGGAGACCGGCGAATGGCTGATGC
GCAATCTCGCCAATGCGCTGCTGATCAACGTCGTGCTGGCGATCTTCAACCTGATCCCGATCCCGCCCCTCGACGGCGGC
CGGATCGCCGTCGGCCTGCTACCGCGCGTGCTGGGACGGCCGCTGGCGCGTCTCGAGCCGTACGGCATGCTGATCCTGAT
CGGGCTGGTCTTTCTGATGCCGCTCGCCGGCCTCGGCGGCGCGACGCAATGGATCGCGCAATCCAGCCGCTACGTCGTCG
AGGCGATCCTGCGGCTGACCGGCAACGCTTGA

Upstream 100 bases:

>100_bases
GATGCGCTCCGCGGCGCGCGCGGCGGTGGCGCGGGTCGGATCAAGGTCCTATATCGGGAACCAGCAACGGCGGATGGCGC
CGGCGCCATCAGGACGATCG

Downstream 100 bases:

>100_bases
GGTACGCGAGTCCGCCGATCCGCGCCGAACGTTGAACCTCTTCTGCGCGACCACCTCAGGATCGTTGAAGTCGTCAACGG
ACTACGGCAAGGTGCCGCCG

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSDPLSTMMLVISVWALPLVIAITFHEAAHAYVARACGDNTAWMLGRVTLNPIKHIDPFGTVLLPLLLLAIQSPFLFGYA
KPVPVNFRGLRNPRRDMILVAAAGPAINLALALIAAIAIRLIDLPGETGEWLMRNLANALLINVVLAIFNLIPIPPLDGG
RIAVGLLPRVLGRPLARLEPYGMLILIGLVFLMPLAGLGGATQWIAQSSRYVVEAILRLTGNA

Sequences:

>Translated_223_residues
MSDPLSTMMLVISVWALPLVIAITFHEAAHAYVARACGDNTAWMLGRVTLNPIKHIDPFGTVLLPLLLLAIQSPFLFGYA
KPVPVNFRGLRNPRRDMILVAAAGPAINLALALIAAIAIRLIDLPGETGEWLMRNLANALLINVVLAIFNLIPIPPLDGG
RIAVGLLPRVLGRPLARLEPYGMLILIGLVFLMPLAGLGGATQWIAQSSRYVVEAILRLTGNA
>Mature_222_residues
SDPLSTMMLVISVWALPLVIAITFHEAAHAYVARACGDNTAWMLGRVTLNPIKHIDPFGTVLLPLLLLAIQSPFLFGYAK
PVPVNFRGLRNPRRDMILVAAAGPAINLALALIAAIAIRLIDLPGETGEWLMRNLANALLINVVLAIFNLIPIPPLDGGR
IAVGLLPRVLGRPLARLEPYGMLILIGLVFLMPLAGLGGATQWIAQSSRYVVEAILRLTGNA

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23971; Mature: 23840

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPLSTMMLVISVWALPLVIAITFHEAAHAYVARACGDNTAWMLGRVTLNPIKHIDPFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHCCCHH
TVLLPLLLLAIQSPFLFGYAKPVPVNFRGLRNPRRDMILVAAAGPAINLALALIAAIAIR
HHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
LIDLPGETGEWLMRNLANALLINVVLAIFNLIPIPPLDGGRIAVGLLPRVLGRPLARLEP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHCCC
YGMLILIGLVFLMPLAGLGGATQWIAQSSRYVVEAILRLTGNA
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDPLSTMMLVISVWALPLVIAITFHEAAHAYVARACGDNTAWMLGRVTLNPIKHIDPFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHCCCHH
TVLLPLLLLAIQSPFLFGYAKPVPVNFRGLRNPRRDMILVAAAGPAINLALALIAAIAIR
HHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
LIDLPGETGEWLMRNLANALLINVVLAIFNLIPIPPLDGGRIAVGLLPRVLGRPLARLEP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHCCC
YGMLILIGLVFLMPLAGLGGATQWIAQSSRYVVEAILRLTGNA
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]