Click here to switch to the map view.

The map label for this gene is ydjA [H]

Identifier: 86749284

GI number: 86749284

Start: 2454913

End: 2455422

Strand: Reverse

Name: ydjA [H]

Synonym: RPB_2163

Alternate gene names: 86749284

Gene position: 2455422-2454913 (Counterclockwise)

Preceding gene: 86749286

Following gene: 86749281

Centisome position: 46.05

GC content: 71.37

Gene sequence:

>510_bases
ATGACCGGGCCCGGCCCCTCGCCCGAGGAGCTGGAGACCATCCTCACCATCGGCGCCCGGGTGCCGGATCACGGCAAGAT
CGCGCCGTGGCGCTTCATCGTGTTCGAAGGCGAGGCGCGGGCGCGCGCCGGCGAAGTGATCGCGCAGGCGTTCGCGCGCA
ACAAGACGGACGCGACGCCGGAGGAGATCGCGGCGGAGCGCGGCCGGCTCAGCGAAGCGCCGCTGGTGATCGCGGTCGTG
AGCGCGCCGAAGCCGCATCCCAAGGTGCCGGCCTGGGAGCAGGAACTGTCCGCCGGCGCGAGCTGCATGAACATCGTCGC
CGCAGCGACCGCGCTCGGGTACGGCGCCAACTGGCTCTCGGGCTGGATCGCCTATGACCGCGACGTGCTCGCCGGCCTCG
GATTGAAAGACAACGAGAAGCTCGCCGGCTTCATCCACATCGGCACCCGCACCCGGGCGAACGAAGACCGCCCGCGGCCG
GCGCTGGCGGAGATCGTGACGCGGTTCTGA

Upstream 100 bases:

>100_bases
CGCGGATCGCCGCCGCGGGCGGCGCCGGAACAGATGGAGAGCAGCCATTTCCGACCCGATCGACTTCCTCAAGACCCGCC
GTTCCGTGAAGCCGCGCGAG

Downstream 100 bases:

>100_bases
CATTTCGCCGACGCGCGCAGCAGGATTGATCGGATCGCGCTTCGTCCGTGCGCGACCGATCTGCGATCAGCCGATCCGCG
CCGATCAATCCCGCACCGCC

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTGPGPSPEELETILTIGARVPDHGKIAPWRFIVFEGEARARAGEVIAQAFARNKTDATPEEIAAERGRLSEAPLVIAVV
SAPKPHPKVPAWEQELSAGASCMNIVAAATALGYGANWLSGWIAYDRDVLAGLGLKDNEKLAGFIHIGTRTRANEDRPRP
ALAEIVTRF

Sequences:

>Translated_169_residues
MTGPGPSPEELETILTIGARVPDHGKIAPWRFIVFEGEARARAGEVIAQAFARNKTDATPEEIAAERGRLSEAPLVIAVV
SAPKPHPKVPAWEQELSAGASCMNIVAAATALGYGANWLSGWIAYDRDVLAGLGLKDNEKLAGFIHIGTRTRANEDRPRP
ALAEIVTRF
>Mature_168_residues
TGPGPSPEELETILTIGARVPDHGKIAPWRFIVFEGEARARAGEVIAQAFARNKTDATPEEIAAERGRLSEAPLVIAVVS
APKPHPKVPAWEQELSAGASCMNIVAAATALGYGANWLSGWIAYDRDVLAGLGLKDNEKLAGFIHIGTRTRANEDRPRPA
LAEIVTRF

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=147, Percent_Identity=40.1360544217687, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 18104; Mature: 17973

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPGPSPEELETILTIGARVPDHGKIAPWRFIVFEGEARARAGEVIAQAFARNKTDATP
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCH
EEIAAERGRLSEAPLVIAVVSAPKPHPKVPAWEQELSAGASCMNIVAAATALGYGANWLS
HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
GWIAYDRDVLAGLGLKDNEKLAGFIHIGTRTRANEDRPRPALAEIVTRF
HHHHHCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TGPGPSPEELETILTIGARVPDHGKIAPWRFIVFEGEARARAGEVIAQAFARNKTDATP
CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCH
EEIAAERGRLSEAPLVIAVVSAPKPHPKVPAWEQELSAGASCMNIVAAATALGYGANWLS
HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
GWIAYDRDVLAGLGLKDNEKLAGFIHIGTRTRANEDRPRPALAEIVTRF
HHHHHCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]