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The map label for this gene is rssA [H]

Identifier: 86749276

GI number: 86749276

Start: 2445702

End: 2446739

Strand: Reverse

Name: rssA [H]

Synonym: RPB_2155

Alternate gene names: 86749276

Gene position: 2446739-2445702 (Counterclockwise)

Preceding gene: 86749281

Following gene: 86749275

Centisome position: 45.89

GC content: 69.27

Gene sequence:

>1038_bases
ATGCTGGAAAATCTGATCGGTCGCGGGCAGAGCAGCCCGCCCAACCAAGGACCGCTTCAAGCCAAGGTCGGCCTCGACAC
CATCCGGCGGCCGGTGATCGGCCTGGCGCTCGGCGGCGGCGCGGCGCGCGGCTTCGCCCATATCGGCATCCTGCGCACCC
TGCTGGACCACGGCATCACCCCGGACGTGGTGGTCGGCACCTCGATCGGCGCGGTGGTCGGCGGCGCCTATGTGGCGGGC
CATCTCGACACGCTGGAAGAATGGGCGCGCGGACTGCAGCCGCGCAACATCATCGGCTATCTCGACATCCGCCTCAACGG
CTCGGGCCTGATCGGCGGCAGCAAGCTCGCCGCCCAGCTCGAAGCCACGCTCGGCCAGACCCTGATCCAGGACCTCAAGC
AGAAATTCGCCTCGGTGGCGACCGAAGTGCGCACCGGCCACGAGATCTGGCTGACGCATGGCCGCATCGTCGACGCGGTG
CGGGCCTCCTATGCCCTGCCCGGCATCTTCTCGCCGGTGCTGATCGGCGACCGCTGGCTGGTCGACGGCGCGCTGGTCAA
TCCGGTGCCGGTGTCGGCGGCGCGCGCGCTCGGCGCCGAGATCGTGATCGCCGCCAACGTCTCGAGCGACGTGTTCGGCC
ACGGCACCACGATCTTCTCGCACGGCGCGGTCGACGAGGTGATCGAGCCGGCGCCGGAGCCCGAGCCGAAACGCGGCTTC
GGACGATTCTTCTCGCCGGAGAAGCTGATCAAGCAGGAGATCTTCGGCAGCGGCAACCGTCCCGGCATCTCCAAGGTGAT
GGTCGACGCCTTCAACATCATGCAGGACCGCATCACCCGCGCAAGGCTCGCCGGCGATCCGCCGGACATGCTGATCTCGC
CGCGGGTCGGTCGGATCGGCTGGTTCGACTTCCACCGCGCCGACGAGATGATCGCCCACGGCGCGCGCGCCGCCGAACGC
GCCATCGACTCGATCCGCGAAGCGATCGAGGAAGCCGCCCCGCACGGCGCCAAGGTGGACGTGCCGGTCGAGACGTGA

Upstream 100 bases:

>100_bases
GATTTGGGCAGATCGTTTGATCGCGCTTCAATCGCCACTGGGCTACACCGCGCAGGCACCGGCCGCGTCAGCCAGGCCGG
AGCGGTTCGAGGAGGCAACC

Downstream 100 bases:

>100_bases
GGCGTTCGCGAGACGTGAGGCGCTCGTCGCAGGCGGTCCGCAAACCGTCGGCCATGACCGGCGTGCATGACCGGGGTGCA
TGACACCGAACTATCAACGA

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLENLIGRGQSSPPNQGPLQAKVGLDTIRRPVIGLALGGGAARGFAHIGILRTLLDHGITPDVVVGTSIGAVVGGAYVAG
HLDTLEEWARGLQPRNIIGYLDIRLNGSGLIGGSKLAAQLEATLGQTLIQDLKQKFASVATEVRTGHEIWLTHGRIVDAV
RASYALPGIFSPVLIGDRWLVDGALVNPVPVSAARALGAEIVIAANVSSDVFGHGTTIFSHGAVDEVIEPAPEPEPKRGF
GRFFSPEKLIKQEIFGSGNRPGISKVMVDAFNIMQDRITRARLAGDPPDMLISPRVGRIGWFDFHRADEMIAHGARAAER
AIDSIREAIEEAAPHGAKVDVPVET

Sequences:

>Translated_345_residues
MLENLIGRGQSSPPNQGPLQAKVGLDTIRRPVIGLALGGGAARGFAHIGILRTLLDHGITPDVVVGTSIGAVVGGAYVAG
HLDTLEEWARGLQPRNIIGYLDIRLNGSGLIGGSKLAAQLEATLGQTLIQDLKQKFASVATEVRTGHEIWLTHGRIVDAV
RASYALPGIFSPVLIGDRWLVDGALVNPVPVSAARALGAEIVIAANVSSDVFGHGTTIFSHGAVDEVIEPAPEPEPKRGF
GRFFSPEKLIKQEIFGSGNRPGISKVMVDAFNIMQDRITRARLAGDPPDMLISPRVGRIGWFDFHRADEMIAHGARAAER
AIDSIREAIEEAAPHGAKVDVPVET
>Mature_345_residues
MLENLIGRGQSSPPNQGPLQAKVGLDTIRRPVIGLALGGGAARGFAHIGILRTLLDHGITPDVVVGTSIGAVVGGAYVAG
HLDTLEEWARGLQPRNIIGYLDIRLNGSGLIGGSKLAAQLEATLGQTLIQDLKQKFASVATEVRTGHEIWLTHGRIVDAV
RASYALPGIFSPVLIGDRWLVDGALVNPVPVSAARALGAEIVIAANVSSDVFGHGTTIFSHGAVDEVIEPAPEPEPKRGF
GRFFSPEKLIKQEIFGSGNRPGISKVMVDAFNIMQDRITRARLAGDPPDMLISPRVGRIGWFDFHRADEMIAHGARAAER
AIDSIREAIEEAAPHGAKVDVPVET

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=32.0652173913043, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=32.0652173913043, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI260656037, Length=185, Percent_Identity=31.3513513513514, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI260656041, Length=185, Percent_Identity=31.3513513513514, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI116256487, Length=185, Percent_Identity=31.3513513513514, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI260656043, Length=185, Percent_Identity=31.3513513513514, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI260656039, Length=185, Percent_Identity=31.3513513513514, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI226510936, Length=299, Percent_Identity=37.7926421404682, Blast_Score=208, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI71997289, Length=169, Percent_Identity=31.3609467455621, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71997299, Length=169, Percent_Identity=31.3609467455621, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=182, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=31.5217391304348, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571388, Length=184, Percent_Identity=31.5217391304348, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36607; Mature: 36607

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENLIGRGQSSPPNQGPLQAKVGLDTIRRPVIGLALGGGAARGFAHIGILRTLLDHGIT
CCCCHHCCCCCCCCCCCCCEECCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCC
PDVVVGTSIGAVVGGAYVAGHLDTLEEWARGLQPRNIIGYLDIRLNGSGLIGGSKLAAQL
CCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
EATLGQTLIQDLKQKFASVATEVRTGHEIWLTHGRIVDAVRASYALPGIFSPVLIGDRWL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEE
VDGALVNPVPVSAARALGAEIVIAANVSSDVFGHGTTIFSHGAVDEVIEPAPEPEPKRGF
ECCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCC
GRFFSPEKLIKQEIFGSGNRPGISKVMVDAFNIMQDRITRARLAGDPPDMLISPRVGRIG
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCC
WFDFHRADEMIAHGARAAERAIDSIREAIEEAAPHGAKVDVPVET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
>Mature Secondary Structure
MLENLIGRGQSSPPNQGPLQAKVGLDTIRRPVIGLALGGGAARGFAHIGILRTLLDHGIT
CCCCHHCCCCCCCCCCCCCEECCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCC
PDVVVGTSIGAVVGGAYVAGHLDTLEEWARGLQPRNIIGYLDIRLNGSGLIGGSKLAAQL
CCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
EATLGQTLIQDLKQKFASVATEVRTGHEIWLTHGRIVDAVRASYALPGIFSPVLIGDRWL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEE
VDGALVNPVPVSAARALGAEIVIAANVSSDVFGHGTTIFSHGAVDEVIEPAPEPEPKRGF
ECCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCC
GRFFSPEKLIKQEIFGSGNRPGISKVMVDAFNIMQDRITRARLAGDPPDMLISPRVGRIG
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCC
WFDFHRADEMIAHGARAAERAIDSIREAIEEAAPHGAKVDVPVET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]