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The map label for this gene is erfK [H]

Identifier: 86749088

GI number: 86749088

Start: 2232853

End: 2233554

Strand: Reverse

Name: erfK [H]

Synonym: RPB_1965

Alternate gene names: 86749088

Gene position: 2233554-2232853 (Counterclockwise)

Preceding gene: 86749091

Following gene: 86749087

Centisome position: 41.89

GC content: 71.08

Gene sequence:

>702_bases
ATGACCCATTTCCAGCTGATCCGCCGCACTGCCGCGATCGCTGCATTCGCGATCGGGGCCGTCGCCCTGACCGGAGCGGC
CCAGGCCGCCCAGCCGCTGCCCTTCCCGTTCCTGCCGCTGCTGCCGCAGCCGGCCGCGCTGCAGCCGGCGGCGCTGGCGC
CGCAGGTCCAGGCCGTGCCGCAGGACGAGGACGACGACGCGTCCGCCGCCGAAATGCCGGCGCGTCTGAAGCGCCAGATC
GTCAGCTACGCCACCCGCGAGGCGCCGGGCACGATCGTGATCGATACTCCGAACACTTATCTCTACTACGTGCTCGGCGG
CGGCCGCGCGATCCGCTACGGCATCGGCGTCGGCCGCGACGGCTTCACCTGGTCGGGCGTGCAGTCGATCACCCGCAAGG
CGGAGTGGCCGGACTGGACCCCGCCGCCGGAGATGATCGCCCGCCAGCCCTATCTGCCGCGCCACATGGCCGGCGGCCCC
GGCAATCCGCTCGGCGCCCGCGCGATGTATCTCGGCGGCACGATCTATCGCATCCACGGCACCAACGCGCCGTCGACGAT
CGGCACCCACGTCTCGTCCGGCTGCATCCGGCTCACCAATGACGACGTCACCGACCTGTATGGCCGGGTCAATGTCGGCG
CCAAGGTGATCGTGCTGCCCGACAACCGCCGCGCCGACAATTCAAGCGGCCGCCGCGGTTAG

Upstream 100 bases:

>100_bases
CGAAAACGTCCTGAAACGGTTGGGCGGGTACTGATGTCGCCAACAAGTCGCCGAAACAGGCGCTGGCGAACAAACAGGGC
GTTCAAACAGGGGACCGACC

Downstream 100 bases:

>100_bases
CGAACGACGACCGACAACGCACTCGAGGACGAATGGCGCGGGCGACCGCGCCGTTTTCTTGTGTCGTATCGTTGCCGGCG
TGTCCGTTGTGACACAACGG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTHFQLIRRTAAIAAFAIGAVALTGAAQAAQPLPFPFLPLLPQPAALQPAALAPQVQAVPQDEDDDASAAEMPARLKRQI
VSYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGRDGFTWSGVQSITRKAEWPDWTPPPEMIARQPYLPRHMAGGP
GNPLGARAMYLGGTIYRIHGTNAPSTIGTHVSSGCIRLTNDDVTDLYGRVNVGAKVIVLPDNRRADNSSGRRG

Sequences:

>Translated_233_residues
MTHFQLIRRTAAIAAFAIGAVALTGAAQAAQPLPFPFLPLLPQPAALQPAALAPQVQAVPQDEDDDASAAEMPARLKRQI
VSYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGRDGFTWSGVQSITRKAEWPDWTPPPEMIARQPYLPRHMAGGP
GNPLGARAMYLGGTIYRIHGTNAPSTIGTHVSSGCIRLTNDDVTDLYGRVNVGAKVIVLPDNRRADNSSGRRG
>Mature_232_residues
THFQLIRRTAAIAAFAIGAVALTGAAQAAQPLPFPFLPLLPQPAALQPAALAPQVQAVPQDEDDDASAAEMPARLKRQIV
SYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGRDGFTWSGVQSITRKAEWPDWTPPPEMIARQPYLPRHMAGGPG
NPLGARAMYLGGTIYRIHGTNAPSTIGTHVSSGCIRLTNDDVTDLYGRVNVGAKVIVLPDNRRADNSSGRRG

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=40.1459854014599, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787040, Length=135, Percent_Identity=40, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=38.4057971014493, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=35.2941176470588, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24867; Mature: 24735

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHFQLIRRTAAIAAFAIGAVALTGAAQAAQPLPFPFLPLLPQPAALQPAALAPQVQAVP
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QDEDDDASAAEMPARLKRQIVSYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGRD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCEEEEEECCCCCC
GFTWSGVQSITRKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHG
CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEC
TNAPSTIGTHVSSGCIRLTNDDVTDLYGRVNVGAKVIVLPDNRRADNSSGRRG
CCCCCHHHHHHCCCEEEECCCCHHHHHHEECCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
THFQLIRRTAAIAAFAIGAVALTGAAQAAQPLPFPFLPLLPQPAALQPAALAPQVQAVP
CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QDEDDDASAAEMPARLKRQIVSYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGRD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCEEEEEECCCCCC
GFTWSGVQSITRKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTIYRIHG
CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEC
TNAPSTIGTHVSSGCIRLTNDDVTDLYGRVNVGAKVIVLPDNRRADNSSGRRG
CCCCCHHHHHHCCCEEEECCCCHHHHHHEECCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]