Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 86748885

GI number: 86748885

Start: 2016085

End: 2016669

Strand: Reverse

Name: pdtaR [H]

Synonym: RPB_1762

Alternate gene names: 86748885

Gene position: 2016669-2016085 (Counterclockwise)

Preceding gene: 86748887

Following gene: 86748884

Centisome position: 37.82

GC content: 62.22

Gene sequence:

>585_bases
ATGGACCCGCTGCTGAAAATCGTGATCGTCGACGAGAACCCGGTGCGTGCCGGGATTCTCACCGAGGGGCTGCGCGAGGC
CGGGATGTCGCAGATCACCTATCTGGCCGCGACCACCAACCTGCTGGCGCGGATCTACGAGATCGACCCCGACGTCATCC
TGATCGATCTGGAGAACCCAAGCCGCGACATGCTGGAGCAGATGTTCCAGGTCAGCCGCATCGTGAAGCGGCCGATCGCG
ATGTTCGTCGACCAGAGCGACACCGCCTCGATCCAGGCCTCGGTCGACGCCGGCGTCTCGGCCTATATCGTCGACGGGCT
GAAAAAGGAGCGAATGAAGCACATCCTCGACCTGTGCATCTCGCGCTTCAACGCCTTCGCCCATCTCGAGACTGAACTGC
ACCGCGCCCGCAGCGCGCTGGACGATCGCAAGGTGATCGACCGCGCCAAGGGCATTCTGATGAAGGCCAAGGGCCTGACC
GAAGAGCAGGCCTATGTGCTGCTGCGGACGACGGCCATGAACGAGAAGAAGAAAATCGCCGAGATCGCCCAGTCGGTGGT
CACCGCGTCGGAGATGCTGAAATGA

Upstream 100 bases:

>100_bases
GGCAGCCCGGCTTGCGCGCCGCCCACCGAATCTCCTTCAATTGGCCGCCGGACTGTGGTTTGTCGACCAGGTGCGACCGA
CCGAGACACCGCTGCCCCGA

Downstream 100 bases:

>100_bases
GCGAGCGCCTGCGCATCGGATTCATCCCGCTGGCCGACGCCGCGGCGCTGATCGTCGCCGTCGACAAGGGGTTCTGCGCC
ACCGAGGGGCTCGACGTCGA

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MDPLLKIVIVDENPVRAGILTEGLREAGMSQITYLAATTNLLARIYEIDPDVILIDLENPSRDMLEQMFQVSRIVKRPIA
MFVDQSDTASIQASVDAGVSAYIVDGLKKERMKHILDLCISRFNAFAHLETELHRARSALDDRKVIDRAKGILMKAKGLT
EEQAYVLLRTTAMNEKKKIAEIAQSVVTASEMLK

Sequences:

>Translated_194_residues
MDPLLKIVIVDENPVRAGILTEGLREAGMSQITYLAATTNLLARIYEIDPDVILIDLENPSRDMLEQMFQVSRIVKRPIA
MFVDQSDTASIQASVDAGVSAYIVDGLKKERMKHILDLCISRFNAFAHLETELHRARSALDDRKVIDRAKGILMKAKGLT
EEQAYVLLRTTAMNEKKKIAEIAQSVVTASEMLK
>Mature_194_residues
MDPLLKIVIVDENPVRAGILTEGLREAGMSQITYLAATTNLLARIYEIDPDVILIDLENPSRDMLEQMFQVSRIVKRPIA
MFVDQSDTASIQASVDAGVSAYIVDGLKKERMKHILDLCISRFNAFAHLETELHRARSALDDRKVIDRAKGILMKAKGLT
EEQAYVLLRTTAMNEKKKIAEIAQSVVTASEMLK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21686; Mature: 21686

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLLKIVIVDENPVRAGILTEGLREAGMSQITYLAATTNLLARIYEIDPDVILIDLENP
CCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
SRDMLEQMFQVSRIVKRPIAMFVDQSDTASIQASVDAGVSAYIVDGLKKERMKHILDLCI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHH
SRFNAFAHLETELHRARSALDDRKVIDRAKGILMKAKGLTEEQAYVLLRTTAMNEKKKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHHCCHHHHHH
EIAQSVVTASEMLK
HHHHHHHHHHHHCC
>Mature Secondary Structure
MDPLLKIVIVDENPVRAGILTEGLREAGMSQITYLAATTNLLARIYEIDPDVILIDLENP
CCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
SRDMLEQMFQVSRIVKRPIAMFVDQSDTASIQASVDAGVSAYIVDGLKKERMKHILDLCI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHH
SRFNAFAHLETELHRARSALDDRKVIDRAKGILMKAKGLTEEQAYVLLRTTAMNEKKKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHHCCHHHHHH
EIAQSVVTASEMLK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]