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The map label for this gene is ynhG [H]

Identifier: 86748292

GI number: 86748292

Start: 1338196

End: 1338870

Strand: Reverse

Name: ynhG [H]

Synonym: RPB_1167

Alternate gene names: 86748292

Gene position: 1338870-1338196 (Counterclockwise)

Preceding gene: 86748294

Following gene: 86748290

Centisome position: 25.11

GC content: 65.04

Gene sequence:

>675_bases
ATGGCGTCGATGGCATCGAGACTGGGACTGCTGGCGGTAGGTTTGCTGCTGTCGGGCTGCATGCAGACCACCTACCAGGC
GGCGCCGGAAGCGACGCTGAAGCCGAACGACAAGGCGCAGCTCGCCAAAGCGCGCTACGCCAAGGTGTCGGTGCCGGAAC
AGTTCCGCCGCGCCATCGTCGACTATCACCGCAAGGAAACGCCCGGCACCATCGTGGTCGATTCCGACAATCATTATCTC
TACCTGGTGCAGGACGGCGGCAAGGCGATCCGCTACGGCGTCACCGTCGGCGAGGAAGCGCTGGCCTTCTCCGGCATCGC
CCGGGTCGGCAACATGGCGGAATGGCCGAAGTGGACGCCGACCGCGGACATCCACAAGCGGATCGAAGGCCTGCCGGCCT
CGGTGCCCGGCGGCGTCGACAACCCGCTCGGCGCCCGCGCGTTGTATCTCTATCAGGGCAACCGCGACACCCTGTTCCGG
ATCCACGGCACCAACCAGCCGGAATATATCGGCGCCTCGATTTCCTCGGGCTGCATCCGCATGACCAATGAGGACGTCAT
CGACCTGTACACCCGGGTCAAGAACGGCACCATCGTGGTGGTGCTGGAGCCCAAGCACGGCGACTCGCCGTACAATTCGA
AGATGGCGCAGGGCAGCGGCACCGCGACGCAGTAA

Upstream 100 bases:

>100_bases
GCGATAATCAAGATTGTGGAATCATGATTTCGCTGAAGTCGTGAAGCCGCTGGTCGGTGTTGATTACCGTCCGGCGCAGA
AGGTCGATTGGAACGATAGA

Downstream 100 bases:

>100_bases
CGCGACGCGGCGGGCGCCCGGCGGATCCCTCCGCAGAATTCGAAAAGCGCCGGTTTTCCGGCGCTTTTTTATTGCGGAAG
CGCACCCCAAGCACGGCGCG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MASMASRLGLLAVGLLLSGCMQTTYQAAPEATLKPNDKAQLAKARYAKVSVPEQFRRAIVDYHRKETPGTIVVDSDNHYL
YLVQDGGKAIRYGVTVGEEALAFSGIARVGNMAEWPKWTPTADIHKRIEGLPASVPGGVDNPLGARALYLYQGNRDTLFR
IHGTNQPEYIGASISSGCIRMTNEDVIDLYTRVKNGTIVVVLEPKHGDSPYNSKMAQGSGTATQ

Sequences:

>Translated_224_residues
MASMASRLGLLAVGLLLSGCMQTTYQAAPEATLKPNDKAQLAKARYAKVSVPEQFRRAIVDYHRKETPGTIVVDSDNHYL
YLVQDGGKAIRYGVTVGEEALAFSGIARVGNMAEWPKWTPTADIHKRIEGLPASVPGGVDNPLGARALYLYQGNRDTLFR
IHGTNQPEYIGASISSGCIRMTNEDVIDLYTRVKNGTIVVVLEPKHGDSPYNSKMAQGSGTATQ
>Mature_223_residues
ASMASRLGLLAVGLLLSGCMQTTYQAAPEATLKPNDKAQLAKARYAKVSVPEQFRRAIVDYHRKETPGTIVVDSDNHYLY
LVQDGGKAIRYGVTVGEEALAFSGIARVGNMAEWPKWTPTADIHKRIEGLPASVPGGVDNPLGARALYLYQGNRDTLFRI
HGTNQPEYIGASISSGCIRMTNEDVIDLYTRVKNGTIVVVLEPKHGDSPYNSKMAQGSGTATQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=138, Percent_Identity=39.8550724637681, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788299, Length=163, Percent_Identity=31.9018404907975, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787356, Length=143, Percent_Identity=34.2657342657343, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787040, Length=140, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24268; Mature: 24137

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASMASRLGLLAVGLLLSGCMQTTYQAAPEATLKPNDKAQLAKARYAKVSVPEQFRRAIV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
DYHRKETPGTIVVDSDNHYLYLVQDGGKAIRYGVTVGEEALAFSGIARVGNMAEWPKWTP
HHHCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCC
TADIHKRIEGLPASVPGGVDNPLGARALYLYQGNRDTLFRIHGTNQPEYIGASISSGCIR
CHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCEECCCCCCCEEE
MTNEDVIDLYTRVKNGTIVVVLEPKHGDSPYNSKMAQGSGTATQ
ECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASMASRLGLLAVGLLLSGCMQTTYQAAPEATLKPNDKAQLAKARYAKVSVPEQFRRAIV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
DYHRKETPGTIVVDSDNHYLYLVQDGGKAIRYGVTVGEEALAFSGIARVGNMAEWPKWTP
HHHCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCC
TADIHKRIEGLPASVPGGVDNPLGARALYLYQGNRDTLFRIHGTNQPEYIGASISSGCIR
CHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCEECCCCCCCEEE
MTNEDVIDLYTRVKNGTIVVVLEPKHGDSPYNSKMAQGSGTATQ
ECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]