Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 86748264

GI number: 86748264

Start: 1310037

End: 1310735

Strand: Reverse

Name: ydcN [C]

Synonym: RPB_1139

Alternate gene names: 86748264

Gene position: 1310735-1310037 (Counterclockwise)

Preceding gene: 86748265

Following gene: 86748263

Centisome position: 24.58

GC content: 64.81

Gene sequence:

>699_bases
ATGACCACGCACGACACTGTCGAAGGCCGGAAGCAGCAGATGAAGAAGCCGAAACCAGATCCATCGTCCGCCGATCCGCA
GCGCGGCGCCGCCGAATATCGCACCGGCTCCAACGCGCCGCAGGACACCGAGCGCAGCCTCGAACGTGCGCTCGGCGCCA
AGATCCGCGCCATCCGCCGGGAGCGGGATCTGTCGGTCTCGGATCTCTCCAGCGCCTCGAACATCTCCGCCGGGATGATG
TCGAAGATCGAGAACGGTCAGATTTCGCCGTCGCTGTCGACGCTGCAGTCGATCGCGGGCGCGCTCAACGTGCCGCTCAG
CCTGTTGTTCGCCGCCTCCGAGCAGCGGCGGGATTGCTCCTTCGTCCGCGCCAAGCAGGGCGTCGCGATCGAGCGGCGCG
GCTCCAAGGCCGGCCATCTGTATCAGTTGCTCGGCCATGTGATCGGCGGCGAGGTGGTGGTCGAGCCCTATCTGATCTCG
CTGCAGGAGGGCGCCAGCACCCACACCGCGTTCCAGCACGCCGGCATGGAGTTCATCTACATGCTGACCGGCGAAGTGAT
CTATCGCCACGGCGACAATTCCTACCGGCTGCGGCCCGGCGATTCGATGCTGTTCGATTCCGGTGCGCTGCACGGACCGG
AAACGCTGGTGAAACTGCCGATGACCTATCTGTCGATCATCGTCTATCCGCGAAGCTGA

Upstream 100 bases:

>100_bases
GCGCATTTCTCGCGCGTCTATAGGCAGCGCTTCGCGCGCACGCCCTCGGCCGACCGCAGGCTCTGACGAGAGTGGTGCAC
GGCCCGGGAATATGCGCTTT

Downstream 100 bases:

>100_bases
GACGTCGCGCCGGCGGATGACAGGGGCAGACGCGCGCGGCACGGCAGACGGCGGATCGCCCGCCGACGGTCCGCACGGGT
GCTGTGCCGCAAATTCGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator With Cupin Domain; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein LacI Family; Helix-Turn-Helix Protein; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERALGAKIRAIRRERDLSVSDLSSASNISAGMM
SKIENGQISPSLSTLQSIAGALNVPLSLLFAASEQRRDCSFVRAKQGVAIERRGSKAGHLYQLLGHVIGGEVVVEPYLIS
LQEGASTHTAFQHAGMEFIYMLTGEVIYRHGDNSYRLRPGDSMLFDSGALHGPETLVKLPMTYLSIIVYPRS

Sequences:

>Translated_232_residues
MTTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERALGAKIRAIRRERDLSVSDLSSASNISAGMM
SKIENGQISPSLSTLQSIAGALNVPLSLLFAASEQRRDCSFVRAKQGVAIERRGSKAGHLYQLLGHVIGGEVVVEPYLIS
LQEGASTHTAFQHAGMEFIYMLTGEVIYRHGDNSYRLRPGDSMLFDSGALHGPETLVKLPMTYLSIIVYPRS
>Mature_231_residues
TTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERALGAKIRAIRRERDLSVSDLSSASNISAGMMS
KIENGQISPSLSTLQSIAGALNVPLSLLFAASEQRRDCSFVRAKQGVAIERRGSKAGHLYQLLGHVIGGEVVVEPYLISL
QEGASTHTAFQHAGMEFIYMLTGEVIYRHGDNSYRLRPGDSMLFDSGALHGPETLVKLPMTYLSIIVYPRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25330; Mature: 25199

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERALGAKIRAIRR
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALNVPLSLLFAASEQRRDCS
HHCCCHHHHCCHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCHHHHHHH
FVRAKQGVAIERRGSKAGHLYQLLGHVIGGEVVVEPYLISLQEGASTHTAFQHAGMEFIY
HHHHHCCCEEECCCCCCHHHHHHHHHHHCCCEEECCEEEEECCCCCHHHHHHHCCHHEEE
MLTGEVIYRHGDNSYRLRPGDSMLFDSGALHGPETLVKLPMTYLSIIVYPRS
EECCEEEEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure 
TTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERALGAKIRAIRR
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALNVPLSLLFAASEQRRDCS
HHCCCHHHHCCHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCHHHHHHH
FVRAKQGVAIERRGSKAGHLYQLLGHVIGGEVVVEPYLISLQEGASTHTAFQHAGMEFIY
HHHHHCCCEEECCCCCCHHHHHHHHHHHCCCEEECCEEEEECCCCCHHHHHHHCCHHEEE
MLTGEVIYRHGDNSYRLRPGDSMLFDSGALHGPETLVKLPMTYLSIIVYPRS
EECCEEEEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA