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The map label for this gene is glcD [H]

Identifier: 86748256

GI number: 86748256

Start: 1299248

End: 1300675

Strand: Reverse

Name: glcD [H]

Synonym: RPB_1131

Alternate gene names: 86748256

Gene position: 1300675-1299248 (Counterclockwise)

Preceding gene: 86748257

Following gene: 86748254

Centisome position: 24.4

GC content: 68.21

Gene sequence:

>1428_bases
ATGACCATCGCCAATCCGCCGCCGGCCACAGCGCTGTCGCCCGACTTGCTCGGGCGCTTCGCCGCGATCGTCGGCGACCG
ACACGCGCTGACCGACCCGGCCGAACTCGAAGCCTATGTCACTGAGGAGCGCAATCTGTATCGCGGCCACTCGCCGCTGG
TGCTGCGCCCGGGCTCTACCGCGGAAGTCGCAGCGATCTGCAGGCTGGCGCACGAGGCGCGCGTCGCGCTGGTGCCGCAA
GGCGGCAACACCGGGCTGGTCGGCGGGCAGACGCCGCACCACGGCGAGGTGGTGGTCTCGCTGAAGCGGATGGACAAGAT
CCGCGACATCGACCTCGCATCGAACACCATGACGGTGGAGGCCGGCGTGATCCTGCAGCATGCGCAGGAGCGCGCCGCCG
ACGTCGACCGGCTGTTCCCGCTGTCGCTCGGCGCGCAGGGCAGTTGCACCATCGGCGGCAATCTGTCGACCAATGCCGGC
GGCACCGCCGCACTGGCCTATGGACTGGCGCGCGACATGGCGCTCGGCATCGAGGTCGTGCTCGCCGACGGCCGCATCCT
CGATCTGTTGTCGAAGCTGAAGAAGGACAACACCGGCTACGATCTGCGCGACCTGTTCATCGGCGCCGAGGGCACGCTCG
GCATCATCACCGCGGCGACGCTGAAGCTGTTTCCAAAGCCGCGCGCGGTCGCGACCGCCTTCGTCGGGCTGCCGTCGCCG
GCGGACGCGCTGAAGCTGCTCGGCATCGCGCAAGCCGAAGCCGCGGGCCATCTCACCAGCTTCGAACTGATCGCCGAGAT
CGCGCTGGATTTCTCGGTGCGCCACGCTGCCAACCGCGATCCGCTGGAGAGCCGGCATCCATGGTACGTGCTGATCGAAT
TGTCGTCGATGCGCGACGACGCAAGCGGCGCGCTGGAGGCGATCCTCGAACAGGGCTTCGAGGCCGGCATCGTCACCGAC
GCGGCGATCGCCGCCTCGCTCGCCCAGCAGCAGGCGTTCTGGAAACTGCGCGAGGAGATCTCGCCGGCGCAGAAGCCGGA
GGGCGGCTCGATCAAGCACGACGTCTCGGTGCCGATCGCCGCAGTGCCTGAGTTCATCGAACAAGCCAATGCGGCGGTGG
TGAAGCTGATCCCCGGCGCGCGGCCGGTGCCGTTCGGCCATCTCGGCGACGGCAACATCCACTACAACGTCACCCAGCCG
CTCGGCGCCGACAAGGCCGCGTATCTGGCGCGTTGGCACGAGGTCAACAAAGTCGTGTTCGACGTGGTGCTGCGGCTCGG
CGGCTCGATCTCGGCCGAGCACGGCATCGGCGTGCTGAAGCGCGACGACCTGCCCGCCGTGAAGGACAAGACCGCGATCG
ACCTGATGCGCGCCATCAAGGCGACGCTCGATCCGCTCGGCATCATGAATCCGGGGAAGGTGGTGTAG

Upstream 100 bases:

>100_bases
CGCCGCGGGATTGATCGCGCCGCCATTGTGGTGAAGTGTCGGCCCGCAGCTCCCGCCGCGACGGGAGGAGCTCAAACACC
AGGCTCGACGGACAACGCCC

Downstream 100 bases:

>100_bases
AGCGACCTAGATCAGCTCTGCTTTTGATGGAATCGGAGCTGGCCATCTGAGGTCGCCGTCATCCTGAGGCGCCCTCCGGG
CCGCGCTGTGCGCGGCGCGG

Product: FAD linked oxidase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MTIANPPPATALSPDLLGRFAAIVGDRHALTDPAELEAYVTEERNLYRGHSPLVLRPGSTAEVAAICRLAHEARVALVPQ
GGNTGLVGGQTPHHGEVVVSLKRMDKIRDIDLASNTMTVEAGVILQHAQERAADVDRLFPLSLGAQGSCTIGGNLSTNAG
GTAALAYGLARDMALGIEVVLADGRILDLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVATAFVGLPSP
ADALKLLGIAQAEAAGHLTSFELIAEIALDFSVRHAANRDPLESRHPWYVLIELSSMRDDASGALEAILEQGFEAGIVTD
AAIAASLAQQQAFWKLREEISPAQKPEGGSIKHDVSVPIAAVPEFIEQANAAVVKLIPGARPVPFGHLGDGNIHYNVTQP
LGADKAAYLARWHEVNKVVFDVVLRLGGSISAEHGIGVLKRDDLPAVKDKTAIDLMRAIKATLDPLGIMNPGKVV

Sequences:

>Translated_475_residues
MTIANPPPATALSPDLLGRFAAIVGDRHALTDPAELEAYVTEERNLYRGHSPLVLRPGSTAEVAAICRLAHEARVALVPQ
GGNTGLVGGQTPHHGEVVVSLKRMDKIRDIDLASNTMTVEAGVILQHAQERAADVDRLFPLSLGAQGSCTIGGNLSTNAG
GTAALAYGLARDMALGIEVVLADGRILDLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVATAFVGLPSP
ADALKLLGIAQAEAAGHLTSFELIAEIALDFSVRHAANRDPLESRHPWYVLIELSSMRDDASGALEAILEQGFEAGIVTD
AAIAASLAQQQAFWKLREEISPAQKPEGGSIKHDVSVPIAAVPEFIEQANAAVVKLIPGARPVPFGHLGDGNIHYNVTQP
LGADKAAYLARWHEVNKVVFDVVLRLGGSISAEHGIGVLKRDDLPAVKDKTAIDLMRAIKATLDPLGIMNPGKVV
>Mature_474_residues
TIANPPPATALSPDLLGRFAAIVGDRHALTDPAELEAYVTEERNLYRGHSPLVLRPGSTAEVAAICRLAHEARVALVPQG
GNTGLVGGQTPHHGEVVVSLKRMDKIRDIDLASNTMTVEAGVILQHAQERAADVDRLFPLSLGAQGSCTIGGNLSTNAGG
TAALAYGLARDMALGIEVVLADGRILDLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVATAFVGLPSPA
DALKLLGIAQAEAAGHLTSFELIAEIALDFSVRHAANRDPLESRHPWYVLIELSSMRDDASGALEAILEQGFEAGIVTDA
AIAASLAQQQAFWKLREEISPAQKPEGGSIKHDVSVPIAAVPEFIEQANAAVVKLIPGARPVPFGHLGDGNIHYNVTQPL
GADKAAYLARWHEVNKVVFDVVLRLGGSISAEHGIGVLKRDDLPAVKDKTAIDLMRAIKATLDPLGIMNPGKVV

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=470, Percent_Identity=40, Blast_Score=313, Evalue=2e-85,
Organism=Homo sapiens, GI37595756, Length=474, Percent_Identity=31.8565400843882, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI37595754, Length=497, Percent_Identity=30.3822937625755, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI4501993, Length=199, Percent_Identity=28.643216080402, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1789351, Length=454, Percent_Identity=31.2775330396476, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1787977, Length=522, Percent_Identity=24.3295019157088, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI48994907, Length=172, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=470, Percent_Identity=34.468085106383, Blast_Score=260, Evalue=9e-70,
Organism=Caenorhabditis elegans, GI71992373, Length=488, Percent_Identity=27.6639344262295, Blast_Score=153, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI71992381, Length=488, Percent_Identity=26.6393442622951, Blast_Score=140, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71992392, Length=361, Percent_Identity=29.6398891966759, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17556096, Length=222, Percent_Identity=25.2252252252252, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320023, Length=490, Percent_Identity=37.5510204081633, Blast_Score=328, Evalue=9e-91,
Organism=Saccharomyces cerevisiae, GI6320764, Length=480, Percent_Identity=35, Blast_Score=289, Evalue=8e-79,
Organism=Saccharomyces cerevisiae, GI6320027, Length=441, Percent_Identity=26.984126984127, Blast_Score=142, Evalue=9e-35,
Organism=Drosophila melanogaster, GI18921117, Length=458, Percent_Identity=41.2663755458515, Blast_Score=318, Evalue=8e-87,
Organism=Drosophila melanogaster, GI24639277, Length=458, Percent_Identity=41.2663755458515, Blast_Score=318, Evalue=8e-87,
Organism=Drosophila melanogaster, GI24639275, Length=458, Percent_Identity=41.2663755458515, Blast_Score=318, Evalue=8e-87,
Organism=Drosophila melanogaster, GI24653753, Length=186, Percent_Identity=28.494623655914, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50134; Mature: 50003

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIANPPPATALSPDLLGRFAAIVGDRHALTDPAELEAYVTEERNLYRGHSPLVLRPGST
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCHHCCCCCCEEECCCCC
AEVAAICRLAHEARVALVPQGGNTGLVGGQTPHHGEVVVSLKRMDKIRDIDLASNTMTVE
HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEEEE
AGVILQHAQERAADVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGIEVV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEE
LADGRILDLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVATAFVGLPSP
EECCHHHHHHHHHHCCCCCCCHHHEEECCCCCCHHHEEEHHHHCCCCHHHHHHEECCCCC
ADALKLLGIAQAEAAGHLTSFELIAEIALDFSVRHAANRDPLESRHPWYVLIELSSMRDD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC
ASGALEAILEQGFEAGIVTDAAIAASLAQQQAFWKLREEISPAQKPEGGSIKHDVSVPIA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
AVPEFIEQANAAVVKLIPGARPVPFGHLGDGNIHYNVTQPLGADKAAYLARWHEVNKVVF
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
DVVLRLGGSISAEHGIGVLKRDDLPAVKDKTAIDLMRAIKATLDPLGIMNPGKVV
HHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TIANPPPATALSPDLLGRFAAIVGDRHALTDPAELEAYVTEERNLYRGHSPLVLRPGST
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCHHCCCCCCEEECCCCC
AEVAAICRLAHEARVALVPQGGNTGLVGGQTPHHGEVVVSLKRMDKIRDIDLASNTMTVE
HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEEEE
AGVILQHAQERAADVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGIEVV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEE
LADGRILDLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVATAFVGLPSP
EECCHHHHHHHHHHCCCCCCCHHHEEECCCCCCHHHEEEHHHHCCCCHHHHHHEECCCCC
ADALKLLGIAQAEAAGHLTSFELIAEIALDFSVRHAANRDPLESRHPWYVLIELSSMRDD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC
ASGALEAILEQGFEAGIVTDAAIAASLAQQQAFWKLREEISPAQKPEGGSIKHDVSVPIA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
AVPEFIEQANAAVVKLIPGARPVPFGHLGDGNIHYNVTQPLGADKAAYLARWHEVNKVVF
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
DVVLRLGGSISAEHGIGVLKRDDLPAVKDKTAIDLMRAIKATLDPLGIMNPGKVV
HHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]