Click here to switch to the map view.

The map label for this gene is 86748254

Identifier: 86748254

GI number: 86748254

Start: 1297671

End: 1298177

Strand: Reverse

Name: 86748254

Synonym: RPB_1129

Alternate gene names: NA

Gene position: 1298177-1297671 (Counterclockwise)

Preceding gene: 86748256

Following gene: 86748253

Centisome position: 24.35

GC content: 63.91

Gene sequence:

>507_bases
ATGTCGTCGATGCAACCAATCCCGTCAGCGAGCGCCAGCACTCCGTTCGGCGCAGATGGAGCTGCGCGCGCTGCGCAGCT
CGCAGCGGCCAACATCAATCCCCGCACCGGCCTCGCCACCGACTATCTGAATCACTTCAACGAAGCGGTCATGCTGCTCG
AAATGATTCCCGATATGCCGGAATGCGCGGAAGATTTCCTCGCCTGGCAACCGCTGTCCTATGCCGAGCATTTCAAAGCC
TCGAACTTCAAGGCACGCGACCTCGCGATCGAAGCCTATGAAACCGCCGACCCCGGCATCCGCTCGGATTTCGACGACAT
CATCGACAACATGACCCGGATCCTCACCGCGGTCGGCGATGCGATGCGCGGAGCCCAGCAGGACGCCACGCGCGCGCGAC
TCGCCGAGGAGGCGGTCGGCTGGATCAAGCCGATGATCGGCCGCGCCGGCGGCGTCATCAACGGCCAGGGCAGCGAGGCC
GACGTCGACTACATCATGGCGCACTGA

Upstream 100 bases:

>100_bases
GGCAGGTGCCGAAGTCATGACAAAGCGGCCGCACATTGCGCATTGTTCCGAGGTCGCGTCTTCAGAGCCTATTAACTTGG
TTAATCCAAGAATACCATCG

Downstream 100 bases:

>100_bases
TCGCCGTGACGCCGCCCACGCCGCCGCACCATCCCCAGATCGCCGTCAGCGCTTCGATTTTCCGTGATGGAAAGCTGTTG
CTGGTCCGCCGCGCGCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSSMQPIPSASASTPFGADGAARAAQLAAANINPRTGLATDYLNHFNEAVMLLEMIPDMPECAEDFLAWQPLSYAEHFKA
SNFKARDLAIEAYETADPGIRSDFDDIIDNMTRILTAVGDAMRGAQQDATRARLAEEAVGWIKPMIGRAGGVINGQGSEA
DVDYIMAH

Sequences:

>Translated_168_residues
MSSMQPIPSASASTPFGADGAARAAQLAAANINPRTGLATDYLNHFNEAVMLLEMIPDMPECAEDFLAWQPLSYAEHFKA
SNFKARDLAIEAYETADPGIRSDFDDIIDNMTRILTAVGDAMRGAQQDATRARLAEEAVGWIKPMIGRAGGVINGQGSEA
DVDYIMAH
>Mature_167_residues
SSMQPIPSASASTPFGADGAARAAQLAAANINPRTGLATDYLNHFNEAVMLLEMIPDMPECAEDFLAWQPLSYAEHFKAS
NFKARDLAIEAYETADPGIRSDFDDIIDNMTRILTAVGDAMRGAQQDATRARLAEEAVGWIKPMIGRAGGVINGQGSEAD
VDYIMAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18049; Mature: 17918

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMQPIPSASASTPFGADGAARAAQLAAANINPRTGLATDYLNHFNEAVMLLEMIPDMP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
ECAEDFLAWQPLSYAEHFKASNFKARDLAIEAYETADPGIRSDFDDIIDNMTRILTAVGD
HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AMRGAQQDATRARLAEEAVGWIKPMIGRAGGVINGQGSEADVDYIMAH
HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECC
>Mature Secondary Structure 
SSMQPIPSASASTPFGADGAARAAQLAAANINPRTGLATDYLNHFNEAVMLLEMIPDMP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
ECAEDFLAWQPLSYAEHFKASNFKARDLAIEAYETADPGIRSDFDDIIDNMTRILTAVGD
HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AMRGAQQDATRARLAEEAVGWIKPMIGRAGGVINGQGSEADVDYIMAH
HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA