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The map label for this gene is 86748210

Identifier: 86748210

GI number: 86748210

Start: 1245973

End: 1247751

Strand: Direct

Name: 86748210

Synonym: RPB_1085

Alternate gene names: NA

Gene position: 1245973-1247751 (Clockwise)

Preceding gene: 86748209

Following gene: 86748211

Centisome position: 23.37

GC content: 64.42

Gene sequence:

>1779_bases
ATGCTTCTTCACCGCTTCCGTCGTTCGATGTTTGTCGCCGTCACCGTCGCGGCGCTGCCGATCGCGGGGCAGGCGCTGGC
GCAGACTCCGGACCATCCGGGCGACAATTCCGCGCAGTTTCCGACCAGCCAGGATCTGCGGTCGATGACCACGGCGGGCA
GCTATCTCGCCGCCCGCCACGCCAGCGTCGAGCGCGACGCCGCCTCGGCCGCGGCGTTCTATCGGTCGGCGCTGCGCACC
GACCCGAAGAACAACGAATTGCTCGACCGCGCCTTCATCTCTTCGCTGGCCGAAGGCAATATCGAGGAGTCGGTCAAGCT
CGCCGACCGGATTCTCAAGATCGACAAGACCAACCGCGTGGCGCGGCTGGTGATCGGCGTGCGCGATCTGAAGACCAAGA
AATACGCCGCAGCGGTCCAGAACGTGAATCTGTCGGTCCGCGGCCCGATCACCGATCTGGTCGCGACGCTGCTGTCGAGC
TGGGCGATGGAGGGCGCCGGCGACGTCAAGGGCGCCGTCGCCAATATCGACAAGCTCGCCGGTCCGGAATGGTATCCGAT
CTTCAAGGATCTGCATTCCGGCATGATGCTCGAGCTCGCCAACAAGCAGAAGGACGCCGGCGTCCGCTTCGAGCGGGCCT
ACAAGCTCGACGATTCCGCGCTTCGGGTGACGGATGCCTATGCGCGCTGGCTGTCGCGCAACAAGGACGACGGCTCCGCG
GTCGCGATCTACGAGGGCTTCGACAAGAAGCTGTCGCGCCATCCGTTGGTGTTGGAGGGATTGCGTGACGCCAAGGCCGG
CAAGAAGCTGCCGCCGCTGGTCGACAGCCCGCAGGCCGGCGCTGCCGAAGCGCTGTACGGTATCGGAGCGTCGCTGACCC
GCCGTGGCGGCGAGGACCTCGCGCTGGTCTATCTGCAGCTCGCGCTGTATCTGAAGCCCGATCACGCGCTGGCGCTGCTG
GCGCTCGGCGATCTGTACGAATCGGTGAAGAAGCCGCAGATGGCGGTGAAGGTCTACGAGCGCGTGCCGGCGGATTCGCC
GCTCAAGCGCAACGCCCAGATCCAGCTCGCCACCGATCTCGACGCGATCGACCGCAGCGAGGAAGCGATCAAGATCCTGA
AGACGGTTATCGCCGAGGACGGCAAGGACCTCGAGGCGATCATGGCGCTCGGCAACATCGAGCGCGGCCGCAAGAAGTTC
GCCGATTGCGCGGTCACCTACAGCCAGGGCATCGATGCGCTCACCGGCACCGAGAAGAACAGCTGGGTCTATTATTATTT
CCGCGGCATCTGCGAGGAGCGTTCCAAGCAGTGGGCCAAGGCCGAGGTCGACATGAAGAAGGCGCTGCAGCTGCAGCCCG
AGCAGCCGCATGTTCTGAACTATCTCGGCTATTCCTGGATCGACCAGGGCATCAATCTCGACGAAGCGATGAAGATGATC
AAGCGCGCCGTCGATCAGCGCCCCGACGACGGCTACATCGTCGACTCGCTCGGCTGGGCTTATTTCCGCATCGGCAATTA
CGAAGAGGCGGTGAAGACGCTGGAGCGCGCCATCGATCTGAAGCCGGAAGATCCGACCATCAACGATCACCTCGGCGACG
CCTATTGGCGCGTCGGGCGAACGCTGGAGGCGCGCTTCCAGTGGGCGCACGCCCGCGATCTCAAGCCGGATCCGGAAGAG
TTGCCGAAGATCGAGGCCAAGCTCGCCAACGGTCTCCCGGAGGACACCTCGTCGGCGGCGTCGGCGGACAAGAAAAAAGA
CGACGACAAGGGCGGCTGA

Upstream 100 bases:

>100_bases
GATCCTTGCGATCGGGCGCCAAACCCGGCATTGTCGTCGGCCAAACGCTGCCGGCTCGGCGGCCGGGACATCCGAGCCCT
TTCCTGGAGCTAGGCATTTG

Downstream 100 bases:

>100_bases
GGTGAGTGACGCATTGCCGACAACGGCGTTGAGCGACCAGGCCCGCGCCAAGGTCAATCTCACTTTGCGAGTCGTGGGCC
GCCGCGTCGACGGCTATCAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 592; Mature: 592

Protein sequence:

>592_residues
MLLHRFRRSMFVAVTVAALPIAGQALAQTPDHPGDNSAQFPTSQDLRSMTTAGSYLAARHASVERDAASAAAFYRSALRT
DPKNNELLDRAFISSLAEGNIEESVKLADRILKIDKTNRVARLVIGVRDLKTKKYAAAVQNVNLSVRGPITDLVATLLSS
WAMEGAGDVKGAVANIDKLAGPEWYPIFKDLHSGMMLELANKQKDAGVRFERAYKLDDSALRVTDAYARWLSRNKDDGSA
VAIYEGFDKKLSRHPLVLEGLRDAKAGKKLPPLVDSPQAGAAEALYGIGASLTRRGGEDLALVYLQLALYLKPDHALALL
ALGDLYESVKKPQMAVKVYERVPADSPLKRNAQIQLATDLDAIDRSEEAIKILKTVIAEDGKDLEAIMALGNIERGRKKF
ADCAVTYSQGIDALTGTEKNSWVYYYFRGICEERSKQWAKAEVDMKKALQLQPEQPHVLNYLGYSWIDQGINLDEAMKMI
KRAVDQRPDDGYIVDSLGWAYFRIGNYEEAVKTLERAIDLKPEDPTINDHLGDAYWRVGRTLEARFQWAHARDLKPDPEE
LPKIEAKLANGLPEDTSSAASADKKKDDDKGG

Sequences:

>Translated_592_residues
MLLHRFRRSMFVAVTVAALPIAGQALAQTPDHPGDNSAQFPTSQDLRSMTTAGSYLAARHASVERDAASAAAFYRSALRT
DPKNNELLDRAFISSLAEGNIEESVKLADRILKIDKTNRVARLVIGVRDLKTKKYAAAVQNVNLSVRGPITDLVATLLSS
WAMEGAGDVKGAVANIDKLAGPEWYPIFKDLHSGMMLELANKQKDAGVRFERAYKLDDSALRVTDAYARWLSRNKDDGSA
VAIYEGFDKKLSRHPLVLEGLRDAKAGKKLPPLVDSPQAGAAEALYGIGASLTRRGGEDLALVYLQLALYLKPDHALALL
ALGDLYESVKKPQMAVKVYERVPADSPLKRNAQIQLATDLDAIDRSEEAIKILKTVIAEDGKDLEAIMALGNIERGRKKF
ADCAVTYSQGIDALTGTEKNSWVYYYFRGICEERSKQWAKAEVDMKKALQLQPEQPHVLNYLGYSWIDQGINLDEAMKMI
KRAVDQRPDDGYIVDSLGWAYFRIGNYEEAVKTLERAIDLKPEDPTINDHLGDAYWRVGRTLEARFQWAHARDLKPDPEE
LPKIEAKLANGLPEDTSSAASADKKKDDDKGG
>Mature_592_residues
MLLHRFRRSMFVAVTVAALPIAGQALAQTPDHPGDNSAQFPTSQDLRSMTTAGSYLAARHASVERDAASAAAFYRSALRT
DPKNNELLDRAFISSLAEGNIEESVKLADRILKIDKTNRVARLVIGVRDLKTKKYAAAVQNVNLSVRGPITDLVATLLSS
WAMEGAGDVKGAVANIDKLAGPEWYPIFKDLHSGMMLELANKQKDAGVRFERAYKLDDSALRVTDAYARWLSRNKDDGSA
VAIYEGFDKKLSRHPLVLEGLRDAKAGKKLPPLVDSPQAGAAEALYGIGASLTRRGGEDLALVYLQLALYLKPDHALALL
ALGDLYESVKKPQMAVKVYERVPADSPLKRNAQIQLATDLDAIDRSEEAIKILKTVIAEDGKDLEAIMALGNIERGRKKF
ADCAVTYSQGIDALTGTEKNSWVYYYFRGICEERSKQWAKAEVDMKKALQLQPEQPHVLNYLGYSWIDQGINLDEAMKMI
KRAVDQRPDDGYIVDSLGWAYFRIGNYEEAVKTLERAIDLKPEDPTINDHLGDAYWRVGRTLEARFQWAHARDLKPDPEE
LPKIEAKLANGLPEDTSSAASADKKKDDDKGG

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR013105
- InterPro:   IPR019734 [H]

Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 65430; Mature: 65430

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHRFRRSMFVAVTVAALPIAGQALAQTPDHPGDNSAQFPTSQDLRSMTTAGSYLAARH
CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASVERDAASAAAFYRSALRTDPKNNELLDRAFISSLAEGNIEESVKLADRILKIDKTNRV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
ARLVIGVRDLKTKKYAAAVQNVNLSVRGPITDLVATLLSSWAMEGAGDVKGAVANIDKLA
HHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
GPEWYPIFKDLHSGMMLELANKQKDAGVRFERAYKLDDSALRVTDAYARWLSRNKDDGSA
CCCCHHHHHHHHCCCEEHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHCCCCCCCE
VAIYEGFDKKLSRHPLVLEGLRDAKAGKKLPPLVDSPQAGAAEALYGIGASLTRRGGEDL
EEEECCHHHHHHCCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCHH
ALVYLQLALYLKPDHALALLALGDLYESVKKPQMAVKVYERVPADSPLKRNAQIQLATDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCC
DAIDRSEEAIKILKTVIAEDGKDLEAIMALGNIERGRKKFADCAVTYSQGIDALTGTEKN
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHCCCCCC
SWVYYYFRGICEERSKQWAKAEVDMKKALQLQPEQPHVLNYLGYSWIDQGINLDEAMKMI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
KRAVDQRPDDGYIVDSLGWAYFRIGNYEEAVKTLERAIDLKPEDPTINDHLGDAYWRVGR
HHHHHCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
TLEARFQWAHARDLKPDPEELPKIEAKLANGLPEDTSSAASADKKKDDDKGG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLLHRFRRSMFVAVTVAALPIAGQALAQTPDHPGDNSAQFPTSQDLRSMTTAGSYLAARH
CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASVERDAASAAAFYRSALRTDPKNNELLDRAFISSLAEGNIEESVKLADRILKIDKTNRV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
ARLVIGVRDLKTKKYAAAVQNVNLSVRGPITDLVATLLSSWAMEGAGDVKGAVANIDKLA
HHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
GPEWYPIFKDLHSGMMLELANKQKDAGVRFERAYKLDDSALRVTDAYARWLSRNKDDGSA
CCCCHHHHHHHHCCCEEHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHCCCCCCCE
VAIYEGFDKKLSRHPLVLEGLRDAKAGKKLPPLVDSPQAGAAEALYGIGASLTRRGGEDL
EEEECCHHHHHHCCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCHH
ALVYLQLALYLKPDHALALLALGDLYESVKKPQMAVKVYERVPADSPLKRNAQIQLATDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCC
DAIDRSEEAIKILKTVIAEDGKDLEAIMALGNIERGRKKFADCAVTYSQGIDALTGTEKN
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHCCCCCC
SWVYYYFRGICEERSKQWAKAEVDMKKALQLQPEQPHVLNYLGYSWIDQGINLDEAMKMI
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
KRAVDQRPDDGYIVDSLGWAYFRIGNYEEAVKTLERAIDLKPEDPTINDHLGDAYWRVGR
HHHHHCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
TLEARFQWAHARDLKPDPEELPKIEAKLANGLPEDTSSAASADKKKDDDKGG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7883699; 10984043 [H]