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The map label for this gene is aer [H]

Identifier: 86748196

GI number: 86748196

Start: 1230409

End: 1230945

Strand: Direct

Name: aer [H]

Synonym: RPB_1071

Alternate gene names: 86748196

Gene position: 1230409-1230945 (Clockwise)

Preceding gene: 86748195

Following gene: 86748197

Centisome position: 23.08

GC content: 61.64

Gene sequence:

>537_bases
ATGGCCACAAAAATCCGGCCCACCGGCAAGGAAGTCGTGTTTCCCGCCGCGGAACTAATCGTCTCCAAGACCGATCTCAA
GGGGCGCATCACTTACGCGAACCGGACGTTTTGCCGGATCGCCGGTTACAGCGAGGCCGAACTACTCGGCCAGCCGCACA
GCATCATCCGCCATCCCGACATGCCGCGCGCGGTGTTCCGCCTGGTGTGGGAAACCATCGCCGCCGGTCGCGAGATGTTC
GGCTATGTCAAGAACATGGCGCATTCGGGCGACCATTACTGGGTGTTCGCGCATATCACCCCGTCGTTCGACGATGCCGG
CAAGATCATCGGCTATCACTCCAATCGACGCGCGCCGGATCGCAGCGTGGTCGAGACTGCGATCGCGCCGCTCTATGCCG
AGGTGCTCCGCATCGAAAACAGTCATGCCAACGGCAAGGACGCGGTCGAGGCCGGCACCCGGGCGCTGGTGGATTTCGTG
GCTTCCAAGAAGGTCAGCTATGACGAACTCATGTTCGCTCTCCAGAGCGCAGCTTAG

Upstream 100 bases:

>100_bases
GCGGCGGATTTTGTAGATTTCCGCCGATGGTATTTTAAGCCGTCCTTAATCCGGCTGCTTCTAAGGACGGTTGTCACGTC
AATCACATCGGAGACCGGCG

Downstream 100 bases:

>100_bases
CCTCGCGGTCGTAATCGCCTCTGCGGCGCTCGCAGCCGCGCTGGCCTGGATGAATTATCCGACGGCGGCGTTGTCGCTGC
AGGCGGTCGCGCTCGTGGCG

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MATKIRPTGKEVVFPAAELIVSKTDLKGRITYANRTFCRIAGYSEAELLGQPHSIIRHPDMPRAVFRLVWETIAAGREMF
GYVKNMAHSGDHYWVFAHITPSFDDAGKIIGYHSNRRAPDRSVVETAIAPLYAEVLRIENSHANGKDAVEAGTRALVDFV
ASKKVSYDELMFALQSAA

Sequences:

>Translated_178_residues
MATKIRPTGKEVVFPAAELIVSKTDLKGRITYANRTFCRIAGYSEAELLGQPHSIIRHPDMPRAVFRLVWETIAAGREMF
GYVKNMAHSGDHYWVFAHITPSFDDAGKIIGYHSNRRAPDRSVVETAIAPLYAEVLRIENSHANGKDAVEAGTRALVDFV
ASKKVSYDELMFALQSAA
>Mature_177_residues
ATKIRPTGKEVVFPAAELIVSKTDLKGRITYANRTFCRIAGYSEAELLGQPHSIIRHPDMPRAVFRLVWETIAAGREMFG
YVKNMAHSGDHYWVFAHITPSFDDAGKIIGYHSNRRAPDRSVVETAIAPLYAEVLRIENSHANGKDAVEAGTRALVDFVA
SKKVSYDELMFALQSAA

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=114, Percent_Identity=48.2456140350877, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 19752; Mature: 19621

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKIRPTGKEVVFPAAELIVSKTDLKGRITYANRTFCRIAGYSEAELLGQPHSIIRHPD
CCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCCEEEECCCCHHHHCCCCHHHHCCCC
MPRAVFRLVWETIAAGREMFGYVKNMAHSGDHYWVFAHITPSFDDAGKIIGYHSNRRAPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCC
RSVVETAIAPLYAEVLRIENSHANGKDAVEAGTRALVDFVASKKVSYDELMFALQSAA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ATKIRPTGKEVVFPAAELIVSKTDLKGRITYANRTFCRIAGYSEAELLGQPHSIIRHPD
CCCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCCEEEECCCCHHHHCCCCHHHHCCCC
MPRAVFRLVWETIAAGREMFGYVKNMAHSGDHYWVFAHITPSFDDAGKIIGYHSNRRAPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCC
RSVVETAIAPLYAEVLRIENSHANGKDAVEAGTRALVDFVASKKVSYDELMFALQSAA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]