| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86748122
Identifier: 86748122
GI number: 86748122
Start: 1140494
End: 1141369
Strand: Direct
Name: 86748122
Synonym: RPB_0997
Alternate gene names: NA
Gene position: 1140494-1141369 (Clockwise)
Preceding gene: 86748118
Following gene: 86748123
Centisome position: 21.39
GC content: 67.47
Gene sequence:
>876_bases ATGGATGCCCGCAAGGTTCGCTGCCGCGAGATCGTCGAGACCGATATCGAAGCCGTTTCGGAGCTGCTGACGCGCGGCTT CGCCGGCCGCACGCGCGATTACTGGACGCGGGGGCTGCATCGTCAGCGCGAGCGCGAAATCCCGGCGGGCTGCCCGCGCT ATGGTTACTTGCTGGAAAGCGCGGGCTTGCCGGTCGGCGTGCTGCTGCTGCTCTACACGCAGCGGACCGAAGCCTGTGCG TCGGACATCCGCTGCAACGTGTCGAGCTGGTACGTCGAGCCCGAGTTCCGCAACTACGCGACGTTGCTGACGTCGATGGC GCAGAAGCACAAGCACGTCACCTACATCAACATTTCGCCGGCCGCTAACACCTGGCCGATCATCGAGGCGCAGGGCTTTC GCCGCTATTGCAGCGGCATGTTGTTCGCGGTGCCGCTGCTGTCGCGGGCGGAGAGCGGCGCGACGGTCGAAGTGGTCACC GGCTCCACGGCCGCCGTCGCAGGGCTGCCGCCGGCCGATCTCGACCGGCTGCGCAGCCACGCCGATTACGGCTGCCTGTC GCTGGTCTGCCGGATCGGCGGCGAGGCGATCCCGTTCATCATGCTGCCGAAGCGGATGAAGAGCGGCCGGTTTCCGATGC CGGCGATGCAACTGGTGTATTGCCGGGAGATCGCCGATTTCGTCCGCTGCGCGCGCGCGCTCGGCCGCTTTCTGATCCTG CGCGGCCGGCCGCTGGTGGTGGTCGACGCCAACGGACCGATCGCGGGACTGGCCGGCATCTATACCGAGACGCGCGGCCG CAAATACTTCAAGGGTCCGAACCCGCCGCGGCTCGCCGACCTCACCGAAACCGAACTCGTGCTCTACGGGCCGTGA
Upstream 100 bases:
>100_bases TTCGCCTTCCTGATCGATCCGTGAGACAAACACCATAAGGCGCAAAGATGAATTGAATCTACGCGCGTAGTTGTCAAATC CGGTTGATTGGTAAACAGCG
Downstream 100 bases:
>100_bases CGGACACCCGGCCAACGCGAAAGATCATTCAGGGAAACGCCATGCATCACATGCTCGAGAGCCGCACCGCCGCCGAGGCG CTGGTCGATCAACTGGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MDARKVRCREIVETDIEAVSELLTRGFAGRTRDYWTRGLHRQREREIPAGCPRYGYLLESAGLPVGVLLLLYTQRTEACA SDIRCNVSSWYVEPEFRNYATLLTSMAQKHKHVTYINISPAANTWPIIEAQGFRRYCSGMLFAVPLLSRAESGATVEVVT GSTAAVAGLPPADLDRLRSHADYGCLSLVCRIGGEAIPFIMLPKRMKSGRFPMPAMQLVYCREIADFVRCARALGRFLIL RGRPLVVVDANGPIAGLAGIYTETRGRKYFKGPNPPRLADLTETELVLYGP
Sequences:
>Translated_291_residues MDARKVRCREIVETDIEAVSELLTRGFAGRTRDYWTRGLHRQREREIPAGCPRYGYLLESAGLPVGVLLLLYTQRTEACA SDIRCNVSSWYVEPEFRNYATLLTSMAQKHKHVTYINISPAANTWPIIEAQGFRRYCSGMLFAVPLLSRAESGATVEVVT GSTAAVAGLPPADLDRLRSHADYGCLSLVCRIGGEAIPFIMLPKRMKSGRFPMPAMQLVYCREIADFVRCARALGRFLIL RGRPLVVVDANGPIAGLAGIYTETRGRKYFKGPNPPRLADLTETELVLYGP >Mature_291_residues MDARKVRCREIVETDIEAVSELLTRGFAGRTRDYWTRGLHRQREREIPAGCPRYGYLLESAGLPVGVLLLLYTQRTEACA SDIRCNVSSWYVEPEFRNYATLLTSMAQKHKHVTYINISPAANTWPIIEAQGFRRYCSGMLFAVPLLSRAESGATVEVVT GSTAAVAGLPPADLDRLRSHADYGCLSLVCRIGGEAIPFIMLPKRMKSGRFPMPAMQLVYCREIADFVRCARALGRFLIL RGRPLVVVDANGPIAGLAGIYTETRGRKYFKGPNPPRLADLTETELVLYGP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32359; Mature: 32359
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDARKVRCREIVETDIEAVSELLTRGFAGRTRDYWTRGLHRQREREIPAGCPRYGYLLES CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHC AGLPVGVLLLLYTQRTEACASDIRCNVSSWYVEPEFRNYATLLTSMAQKHKHVTYINISP CCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHCCCEEEEEECC AANTWPIIEAQGFRRYCSGMLFAVPLLSRAESGATVEVVTGSTAAVAGLPPADLDRLRSH CCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCHHHHHHHHH ADYGCLSLVCRIGGEAIPFIMLPKRMKSGRFPMPAMQLVYCREIADFVRCARALGRFLIL CCHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE RGRPLVVVDANGPIAGLAGIYTETRGRKYFKGPNPPRLADLTETELVLYGP CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MDARKVRCREIVETDIEAVSELLTRGFAGRTRDYWTRGLHRQREREIPAGCPRYGYLLES CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHC AGLPVGVLLLLYTQRTEACASDIRCNVSSWYVEPEFRNYATLLTSMAQKHKHVTYINISP CCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHCCCEEEEEECC AANTWPIIEAQGFRRYCSGMLFAVPLLSRAESGATVEVVTGSTAAVAGLPPADLDRLRSH CCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCHHHHHHHHH ADYGCLSLVCRIGGEAIPFIMLPKRMKSGRFPMPAMQLVYCREIADFVRCARALGRFLIL CCHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE RGRPLVVVDANGPIAGLAGIYTETRGRKYFKGPNPPRLADLTETELVLYGP CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA