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The map label for this gene is cbbM

Identifier: 86748076

GI number: 86748076

Start: 1100131

End: 1101516

Strand: Direct

Name: cbbM

Synonym: RPB_0951

Alternate gene names: 86748076

Gene position: 1100131-1101516 (Clockwise)

Preceding gene: 86748075

Following gene: 86748078

Centisome position: 20.63

GC content: 64.21

Gene sequence:

>1386_bases
ATGGACCAGTCGAGCCGCTACGCCAACCTCAACCTCAAAGAAAGCGATCTGATCGCGGGCGGGCGGCATGTGCTGTGCGC
CTACATCATGAAGCCGAAGGACGGCTTCGGCAATTTCCTGCAGACCGCCGCACATTTTTCGGCCGAATCCTCGACTGGTA
CCAATGTCGAAGTCTCCACCACCGACGACTTCACCCGCGGCGTCGATGCGCTGGTCTACGAGATCGACGAAGCCAACAAC
GTGATGAAGATCGCCTACCCGATCGAACTGTTCGATCGCAACGTGATCGATGGCCGCGCGATGATCGCCTCGTTCCTGAC
GCTGACGATCGGCAACAACCAGGGCATGGGCGACGTCGAATACGCCAAGATGCACGATTTCTACGTGCCGCCCGCGTATC
TGCGGCTGTTCGACGGCCCCTCGACCACGATCCGGGATCTGTGGCGCGTGCTCGGCCGGCCGGTGGTCGACGGCGGCTTC
ATCGTCGGCACCATCATCAAGCCCAAGCTCGGCCTGCGGCCGCAGCCTTTCGCCGATGCCTGCTACGATTTCTGGCTCGG
CGGCGATTTCATCAAGAACGACGAACCGCAGGGCAATCAGGTGTTTGCGCCGTTCAAGGAGACGGTGCGGGCGGTCAACG
AGGCGATGCGCCGCGCCCAGGACAAGACCGGCGAGCCGAAGCTGTTCTCGTTCAACATCACCGCCGACGATCACTACGAG
ATGGTGGCGCGCGGCGAATACATCCTCGAGACCTTCGCCGACAACGCCGACCACGTCGCCTTCCTGGTCGACGGCTATGT
CGCCGGCCCCGCCGCGGTGACCACGGCGCGCCGCGCGTTCCCGAAGCAGTATCTGCACTATCATCGCGCCGGCCACGGCG
CGGTGACCTCGCCGCAGTCAAAGCGCGGCTACACCGCATTCGTGCTGTCGAAGATGGCCCGGCTGCAGGGAGCCTCCGGC
ATCCACACCGGCACCATGGGCTTCGGCAAGATGGAAGGCGAAGCCGCCGATCGCGCCATGGCCTACATGATCACCGAAGA
CTCGGCGGACGGACCGTTCTTCCACCAGGAATGGCTCGGCATGAATCCGACCACGCCGATCATCTCCGGCGGCATGAACG
CGCTGCGGATGCCCGGCTTCTTCGACAATCTCGGCCACTCCAACCTGATCATGACCGCGGGCGGCGGCGCCTTCGGCCAT
ATCGACGGCGGCGCGGCGGGCGCCAAGTCGCTGCGGCAGGCTGAGCAGTGCTGGAAGGCTGGCGCCGATCCGGTCGAATT
CGCCAAGGATCATCGCGAATTCGCCCGCGCCTTCGAGAGCTTCCCGCACGATGCCGATGCGCTGTACCCGAACTGGCGCA
ATTCGCTCAAGCTCGCAGCCGCGTAA

Upstream 100 bases:

>100_bases
CTCGATCCGCAGATCGGCCAGGTCGCAAGAGCCGCAGAGTAGTTCGAAACAATCGGGAGCGGCCGCCGGCCGCCCCGCAC
TCGCCATTCAGGAGACCACG

Downstream 100 bases:

>100_bases
GCGGACAGCCGCCCATCGGAACCGAACGGCCCGCCTCGCGCGGGCCGTTTCGTTCGACAGCCACCCGAATTGGGCAATGT
CCGACCTCCACCGGCCCGGT

Product: ribulose bisphosphate carboxylase

Products: NA

Alternate protein names: RuBisCO

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MDQSSRYANLNLKESDLIAGGRHVLCAYIMKPKDGFGNFLQTAAHFSAESSTGTNVEVSTTDDFTRGVDALVYEIDEANN
VMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVEYAKMHDFYVPPAYLRLFDGPSTTIRDLWRVLGRPVVDGGF
IVGTIIKPKLGLRPQPFADACYDFWLGGDFIKNDEPQGNQVFAPFKETVRAVNEAMRRAQDKTGEPKLFSFNITADDHYE
MVARGEYILETFADNADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASG
IHTGTMGFGKMEGEAADRAMAYMITEDSADGPFFHQEWLGMNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGH
IDGGAAGAKSLRQAEQCWKAGADPVEFAKDHREFARAFESFPHDADALYPNWRNSLKLAAA

Sequences:

>Translated_461_residues
MDQSSRYANLNLKESDLIAGGRHVLCAYIMKPKDGFGNFLQTAAHFSAESSTGTNVEVSTTDDFTRGVDALVYEIDEANN
VMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVEYAKMHDFYVPPAYLRLFDGPSTTIRDLWRVLGRPVVDGGF
IVGTIIKPKLGLRPQPFADACYDFWLGGDFIKNDEPQGNQVFAPFKETVRAVNEAMRRAQDKTGEPKLFSFNITADDHYE
MVARGEYILETFADNADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASG
IHTGTMGFGKMEGEAADRAMAYMITEDSADGPFFHQEWLGMNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGH
IDGGAAGAKSLRQAEQCWKAGADPVEFAKDHREFARAFESFPHDADALYPNWRNSLKLAAA
>Mature_461_residues
MDQSSRYANLNLKESDLIAGGRHVLCAYIMKPKDGFGNFLQTAAHFSAESSTGTNVEVSTTDDFTRGVDALVYEIDEANN
VMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVEYAKMHDFYVPPAYLRLFDGPSTTIRDLWRVLGRPVVDGGF
IVGTIIKPKLGLRPQPFADACYDFWLGGDFIKNDEPQGNQVFAPFKETVRAVNEAMRRAQDKTGEPKLFSFNITADDHYE
MVARGEYILETFADNADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASG
IHTGTMGFGKMEGEAADRAMAYMITEDSADGPFFHQEWLGMNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGH
IDGGAAGAKSLRQAEQCWKAGADPVEFAKDHREFARAFESFPHDADALYPNWRNSLKLAAA

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type II subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL2_RHOP2 (Q2J1J9)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484572.1
- ProteinModelPortal:   Q2J1J9
- SMR:   Q2J1J9
- STRING:   Q2J1J9
- GeneID:   3909306
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0951
- eggNOG:   COG1850
- HOGENOM:   HBG405441
- OMA:   NVEVCTT
- ProtClustDB:   PRK13475
- BioCyc:   RPAL316058:RPB_0951-MONOMER
- GO:   GO:0009536
- HAMAP:   MF_01339
- InterPro:   IPR020871
- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 50522; Mature: 50522

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 167-167 ACT_SITE 288-288 BINDING 112-112 BINDING 169-169 BINDING 289-289 BINDING 322-322 BINDING 369-369

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSSRYANLNLKESDLIAGGRHVLCAYIMKPKDGFGNFLQTAAHFSAESSTGTNVEVST
CCCCCCEEECCCCHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
TDDFTRGVDALVYEIDEANNVMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVE
CCHHHHCHHHHEEEECCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHEEEECCCCCCCCCH
YAKMHDFYVPPAYLRLFDGPSTTIRDLWRVLGRPVVDGGFIVGTIIKPKLGLRPQPFADA
HHHHCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHH
CYDFWLGGDFIKNDEPQGNQVFAPFKETVRAVNEAMRRAQDKTGEPKLFSFNITADDHYE
HHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH
MVARGEYILETFADNADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQS
HHHCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRGYTAFVLSKMARLQGASGIHTGTMGFGKMEGEAADRAMAYMITEDSADGPFFHQEWLG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCCCHHHHHCC
MNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGHIDGGAAGAKSLRQAEQCWKA
CCCCCCHHHCCCHHHCCCCHHHCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHHC
GADPVEFAKDHREFARAFESFPHDADALYPNWRNSLKLAAA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MDQSSRYANLNLKESDLIAGGRHVLCAYIMKPKDGFGNFLQTAAHFSAESSTGTNVEVST
CCCCCCEEECCCCHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
TDDFTRGVDALVYEIDEANNVMKIAYPIELFDRNVIDGRAMIASFLTLTIGNNQGMGDVE
CCHHHHCHHHHEEEECCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHEEEECCCCCCCCCH
YAKMHDFYVPPAYLRLFDGPSTTIRDLWRVLGRPVVDGGFIVGTIIKPKLGLRPQPFADA
HHHHCCCCCCHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHH
CYDFWLGGDFIKNDEPQGNQVFAPFKETVRAVNEAMRRAQDKTGEPKLFSFNITADDHYE
HHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH
MVARGEYILETFADNADHVAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQS
HHHCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KRGYTAFVLSKMARLQGASGIHTGTMGFGKMEGEAADRAMAYMITEDSADGPFFHQEWLG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCCCHHHHHCC
MNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGHIDGGAAGAKSLRQAEQCWKA
CCCCCCHHHCCCHHHCCCCHHHCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHHC
GADPVEFAKDHREFARAFESFPHDADALYPNWRNSLKLAAA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA