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The map label for this gene is rhaS [H]

Identifier: 86747925

GI number: 86747925

Start: 896295

End: 897137

Strand: Reverse

Name: rhaS [H]

Synonym: RPB_0799

Alternate gene names: 86747925

Gene position: 897137-896295 (Counterclockwise)

Preceding gene: 86747926

Following gene: 86747924

Centisome position: 16.83

GC content: 70.58

Gene sequence:

>843_bases
ATGACCGCCAGCACAGTCCTGCATCGAGGCACGATCACCGTCTCGGATTTCCGCTGCAGCGCCGGACCGGACGACGTCCC
GTTCGCCGAATGCCACGTCGCGCATTCGATCTCCTACGTGCGCCGCGGCAGTTTCGGCTGCACCACCCGCGGCAGGACCT
ACGAGCTGGTCGCAGGCGCCGTCATGATCGGCCGCCCCGGCGACGACTACGTCTGCAGCCATGAGCACCACGCCTGCGGC
GACGAATGCCTGTCCTTCGCCCTGACGCCGGAGCTCGCCGCGACGCTCGGCGATGACGACACGTTGTGGAGGAGCGGCGC
CGTGCCACCGCGGGCCGAGCTGATGGTGCTCGGCGAGCAGGCGCAGGCCGCCGCCGAGGGCCGCAACGATCTCGGCCTCG
ACGAGATCGGCCAGGTGCTGGCGCAGCGGTTCGCGACGATCGGCGGCGGCCGCGCGTATCAGCCGCCGCCGCTGCGGGCA
CGCGACCGCCGCCGCGTGGTCGAGACCGCGCTGTGGATCGAGGCGCAATGCACGGAGGCGATCGACCTCGAAGCCGCCGC
CGCCCGGGCCGGCCTCAGCCCGTTTCATTTCCTGCGGCTGTTCTCGGCCGTACTCGGCGTCACGCCGCACCAATACCTGG
TGCGTTCGCGGCTGCGCCGCGCCGCGCGATTGCTGGCGGCCGATGACGGCCCGATCACCGATATCGCCTATGAGGTCGGC
TTCGCCGATCTGTCGAATTTCATCCGCTCGTTCCGCCGCGCCGCGGGCCTGTCGCCGCGGGCGTTCCGCAAGGCGTCGCG
GCAGGACCGCAATTTTGTCCAAGAACGGTTGGGAGCCGTCTGA

Upstream 100 bases:

>100_bases
CTTCGCGCGAACCGGTATCCACTTCGCTCGACAATGCTGTCGGGCTCGCGGCTTCGTCGTTGTGGTTTGATCACGACCGG
AATTGCCCTAGCCTCCCCCC

Downstream 100 bases:

>100_bases
ATAGGATCCTCTCCGTCGCGCGCCGGTCGCGCCCGCCCAGGAGAGCATCCATGTCCCAACCGATGTACGATCATATCGGC
CTGAAAGTCGGCGATCTCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGAVMIGRPGDDYVCSHEHHACG
DECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQAQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRA
RDRRRVVETALWIEAQCTEAIDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVG
FADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV

Sequences:

>Translated_280_residues
MTASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGAVMIGRPGDDYVCSHEHHACG
DECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQAQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRA
RDRRRVVETALWIEAQCTEAIDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVG
FADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV
>Mature_279_residues
TASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGAVMIGRPGDDYVCSHEHHACGD
ECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQAQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRAR
DRRRVVETALWIEAQCTEAIDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVGF
ADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30468; Mature: 30337

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGA
CCCCCEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
VMIGRPGDDYVCSHEHHACGDECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQ
EEECCCCCCCEECCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCCCCEEEEECCH
AQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRARDRRRVVETALWIEAQCTEA
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGA
CCCCEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
VMIGRPGDDYVCSHEHHACGDECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQ
EEECCCCCCCEECCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHCCCCCCCCCEEEEECCH
AQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRARDRRRVVETALWIEAQCTEA
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA