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The map label for this gene is ihfB [H]

Identifier: 86747764

GI number: 86747764

Start: 722757

End: 723062

Strand: Reverse

Name: ihfB [H]

Synonym: RPB_0638

Alternate gene names: 86747764

Gene position: 723062-722757 (Counterclockwise)

Preceding gene: 86747765

Following gene: 86747763

Centisome position: 13.56

GC content: 64.05

Gene sequence:

>306_bases
ATGATCAAATCCGAACTCGTTCAGCGTATCGCCGAGCACAACCCGCACCTTTACCAGCGGGACGTCGAGAACATCGTCAA
CGCGATCCTCGACGAGATCGTCGACGCGCTGGCGCGCGGCGATCGGGTCGAGTTGCGCGGCTTCGGCGCGTTTTCGGTGA
AGCATCGGCCGGCGCGTGCCGGCCGCAATCCGCGGACCGGCGCGCATGTTCCGGTCGACCAGAAAAGCGTGCCGTTCTTC
AAGACCGGCAAGGAAATGCGCGAACGGCTGAACCGCGAGACCGGCGACACTGATACCGGCGCGTAA

Upstream 100 bases:

>100_bases
CCGGACGACTTTGTCCAGCCCGCCTCATTTGATTTAGCGTCTTGACAGTTCACAGTATTTTCAAGGAAATGGCGGTCCGC
ACGCACGGACCACACCCTCG

Downstream 100 bases:

>100_bases
CGCGACGCCCGTTTGCTGAGCAAGGCGAGCGAGAACGACATGCAGAAGTTTCTGACAGCCCTGGTGCTGATCCCGCTCGG
ACTGATTTTCATCGTCTTCG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRETGDTDTGA

Sequences:

>Translated_101_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRETGDTDTGA
>Mature_101_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRETGDTDTGA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=96, Evalue=4e-22,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=37.3626373626374, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1788005, Length=74, Percent_Identity=36.4864864864865, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11375; Mature: 11375

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHC
GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRETGDTDTGA
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHC
GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRETGDTDTGA
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA