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The map label for this gene is ydeB [H]

Identifier: 86747677

GI number: 86747677

Start: 620124

End: 621413

Strand: Direct

Name: ydeB [H]

Synonym: RPB_0551

Alternate gene names: 86747677

Gene position: 620124-621413 (Clockwise)

Preceding gene: 86747676

Following gene: 86747680

Centisome position: 11.63

GC content: 65.35

Gene sequence:

>1290_bases
ATGTGCTATATTTGGCACATTACAAACTCGGCACGCGGTTTTGCGGCCGGGAAGGGATCCCGTCAAAAACAACGAACAGG
GGCGTGGCGGTTCCACGCGCAGGCTGTGTCACAGAAAACGCGTAAAATGAGTGTCTCGTCCAAGGGTGCCAAGCGTGGCG
CTGCGGCCGGCCGCAGCGCGACCAACCGATCCAGTATGTCTGCCAAGGACACCCGGACCGTCAAGTCCCCTGCTTCGAAG
GCTGTTGCTGCCAAGACCACGGCTCCCAAAGCCACTGCGTCCAAGACCGCTGCGTCCAAGGCCACCGTGTCCAAAACCAA
GGCCTCTGTTTCACAGGCCTCCGTTTCCAAGGCCTCGAGTTCGAAGGCCGCCGCTGCCAAGGCGAGCGCCGCCAAAGCGA
CTGCGAAGACGACCACCGCAAAGGGTTCCGCTGCGAGGGCTTCGGCTCCCAAGGCGGCGGCTCTCAAGTCCTCGAAAAAC
AAAAGAAGTGCAATGCCATCCAAGACTGCGAAAACTGCCGCCGCGGCGCCCGCTTCCAAGGCGGCTCCGGCCAAGTCGAC
CGCCAAGCCCGCTGCCGCCAAGGCTCCGGTAGCGCCGCCGCGCGCCGCCCCGCCGAAGGCTGCCGCGAAGCCCGAGGTCA
AGCCGGTGGCCGTCAAGCCGGCCGCGCCGCCCAAGGTCGAGGAGCCCAAGAAGGTCGTGACCCAGCGTCAGGGCTTCAAG
GCCAGCGAGTTCGTGGTCTATCCGGCGCATGGCGTCGGCCAGATCCTGGCGATCGAGGAACAGGAAATCGCGGGCGCCAA
GCTCGAACTGTTCGTCATCAACTTCATCAAGGACAAGATGACGCTGCGGGTGCCGACCGCCAAGGTCGCCAATGTCGGGA
TGCGCAAGCTGTCCGACCCGGCGCTGGTGAAGAAGGCGCTGGAGACGCTCAAGGGCCGCGCCCGCGTCAAGCGCACGATG
TGGTCGCGCCGCGCCCAGGAATACGAAGCCAAGATCAATTCGGGCGACATCGTCGCGATCGCCGAAGTGGTCCGCGACCT
GTTCCGCTCGGACTCGCAGCCCGAGCAGTCCTACAGCGAACGCCAGCTCTATGAAGCGGCGCTCGACCGGCTGTCGCGCG
AAATCGCGGTGGTGCAGCAGGTCACCGAGACCGAAGCCGTCAAGGAAGTCGAAGGCCAGCTCGCCAAGAGCCCGCGCCGC
GGCGCCAAGGCCGAGGCGGACGCCGAAGGCGATGCCGAAGGTGATCTCGACGGCGACACCGACGACGCGGTGACCGACGA
AGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCGTTTTTCCAGTCCGGCTTAACCCTGTTGATGATGAATTGACCGGAGCTCCGTGAGGAGCCCGCTGGATTCGTCATAA
ATCATTGATTTTTGCGGGAA

Downstream 100 bases:

>100_bases
GCCGCATCCATCGTCGTCGCAGAGACAAGCAATTTGGGCCCGGCGCAAGCCGGGCCTTTTCTTTTGCGTGCGCCGTTACT
TCGCCGCGGCGGCGCCGACT

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGAKRGAAAGRSATNRSSMSAKDTRTVKSPASK
AVAAKTTAPKATASKTAASKATVSKTKASVSQASVSKASSSKAAAAKASAAKATAKTTTAKGSAARASAPKAAALKSSKN
KRSAMPSKTAKTAAAAPASKAAPAKSTAKPAAAKAPVAPPRAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFK
ASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLKGRARVKRTM
WSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRR
GAKAEADAEGDAEGDLDGDTDDAVTDEAA

Sequences:

>Translated_429_residues
MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGAKRGAAAGRSATNRSSMSAKDTRTVKSPASK
AVAAKTTAPKATASKTAASKATVSKTKASVSQASVSKASSSKAAAAKASAAKATAKTTTAKGSAARASAPKAAALKSSKN
KRSAMPSKTAKTAAAAPASKAAPAKSTAKPAAAKAPVAPPRAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFK
ASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLKGRARVKRTM
WSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRR
GAKAEADAEGDAEGDLDGDTDDAVTDEAA
>Mature_429_residues
MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGAKRGAAAGRSATNRSSMSAKDTRTVKSPASK
AVAAKTTAPKATASKTAASKATVSKTKASVSQASVSKASSSKAAAAKASAAKATAKTTTAKGSAARASAPKAAALKSSKN
KRSAMPSKTAKTAAAAPASKAAPAKSTAKPAAAKAPVAPPRAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFK
ASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLKGRARVKRTM
WSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRR
GAKAEADAEGDAEGDLDGDTDDAVTDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 44798; Mature: 44798

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGAKRGAAAGRSA
CEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
TNRSSMSAKDTRTVKSPASKAVAAKTTAPKATASKTAASKATVSKTKASVSQASVSKASS
CCCCCCCCHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SKAAAAKASAAKATAKTTTAKGSAARASAPKAAALKSSKNKRSAMPSKTAKTAAAAPASK
HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCHHHHCCCCHHHHHHHCCCCCC
AAPAKSTAKPAAAKAPVAPPRAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCC
ASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDP
CCCEEEECCCCCCEEEEECHHHHCCCEEEEEEHHHHHCCEEEECCCHHHHHHHHHHCCCH
ALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPEQSYSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
RQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEADAEGDAEGDLDGDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DDAVTDEAA
CCCCCCCCC
>Mature Secondary Structure
MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGAKRGAAAGRSA
CEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
TNRSSMSAKDTRTVKSPASKAVAAKTTAPKATASKTAASKATVSKTKASVSQASVSKASS
CCCCCCCCHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SKAAAAKASAAKATAKTTTAKGSAARASAPKAAALKSSKNKRSAMPSKTAKTAAAAPASK
HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCHHHHCCCCHHHHHHHCCCCCC
AAPAKSTAKPAAAKAPVAPPRAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCC
ASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDP
CCCEEEECCCCCCEEEEECHHHHCCCEEEEEEHHHHHCCEEEECCCHHHHHHHHHHCCCH
ALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRSDSQPEQSYSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
RQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEADAEGDAEGDLDGDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DDAVTDEAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]